Man pages for ilyamaclean/microclimf
Fast above, below or within canopy gridded microclimate modelling with R
| aboveground | Estimate temperature and humidity at specified height above... |
| albedo | A one m resolution dataset of white sky albedos |
| belowground | Estimate temperature at specified height below ground |
| checkinputs | Check format and values in model inputs |
| climdata | A data frame of hourly weather |
| clumpestimate | Estimate canopy clumpiness |
| dot-ar | convert degrees to radians |
| dot-biomicropoint | Run micropoint for bioclim calculations |
| dot-biosel | identifies which entries of weather time series should be... |
| dot-blendmosaic | blend two adjacent rasters that have overlap |
| dot-cca | Converts variable in a list of data.frame to an array as used... |
| dot-checkbiginputs | Check SpatRasts of model input |
| dot-clearskyrad | Calculate clear sky radiation |
| dot-croprast | Crop raster for running runmicro_big |
| dot-dewpoint | Calculate dewpoint |
| dot-fillr | Fill NAs in raster |
| dot-flowacc | Caclulates flow accumulation |
| dot-flowdir | Calculates flow direction |
| dot-getmode | Calculates mode |
| dot-getselq | Create Vector of quarter entries |
| dot-horizon | Calculates tangent of horizon angle |
| dot-is | Check if input is a SpatRaster or PackedSpatRaster and... |
| dot-jday | Calculates the astronomical Julian day |
| dot-lapserate | Lape rates |
| dot-latlongfromraster | Calculates latitude and longitude from SpatRaster object |
| dot-latsfromr | Latitudes from SpatRaster object |
| dot-latslonsfromr | lats and longs from SpatRaster object, including reprojection |
| dot-listcrop | Crop list of rasters for running runmicro_big |
| dot-lonsfromr | Longitudes from SpatRaster object |
| dot-mfr | Get mean, min, max etc from raster or packaged raster |
| dot-prepsnowinputs1 | prepare inputs for snow microclimate model (data.frame... |
| dot-prepsnowinputs2 | prepare inputs for snow microclimate model (array climate) |
| dot-rast | Create SpatRaster object using a template |
| dot-resamplemelt | resample melt |
| dot-roughlength | Calculate roughness length |
| dot-rta | Convert matrix to array |
| dot-runbioclim1 | Run bioclim with data.frame weather and static veg Run C++... |
| dot-runbioclim2 | Run C++ version of model with time-invarient vegetation and... |
| dot-runbioclim3 | Run C++ version of model with time-invarient vegetation and... |
| dot-runbioclim4 | Run C++ version of model with time-invarient vegetation and... |
| dot-runmicronosnow | Runs microclimate model without snow |
| dot-runmicrosnow1 | Run microclimate grid model with snow (data.frame weather) |
| dot-runmicrosnow2 | Run microclimate grid model with snow (array weather) |
| dot-runmodel1Cpp | Run C++ version of model with time-invarient vegetation and... |
| dot-runmodel2Cpp | Run C++ version of model with time-invarient vegetation and... |
| dot-satvap | Calculate saturated vapour pressure |
| dot-selquarter | identifies which entries of bioclim time series should be... |
| dot-snowmodel1 | full snow model with data.frame weather inputs |
| dot-snowmodel2 | full snow model with array weather inputs |
| dot-snowmodelq1 | quick snow model with data.frame weather inputs |
| dot-snowmodelq2 | quick snow model with array weather inputs |
| dot-soilbelowT | point model soil temperature below |
| dot-soilinit | initialises soil parameters |
| dot-solalt | Calculates the solar altitude |
| dot-solarindex | Calculates the solar coefficient |
| dot-solazi | Calculates the solar azimuth |
| dot-soltime | Calculates solar time |
| dot-sortl | calculate average vegetation value for hours with snow |
| dot-sortl2 | calculate average vegetation value for hours with snow with... |
| dot-sortvegp | Sort out temporal nature of vegetation |
| dot-todf | Converts array of climate data to a dataframe for a given... |
| dot-togp | used by runpointmodela |
| dot-topidx | Calculates topographic wetness index |
| dot-tovp | used by runpointmodela |
| dot-tpicalc | Calculates topographic positioning index |
| dot-unpack | unpack model inputs |
| dot-vta | Convert vector to array |
| dot-windcoef | Calculates wind shelter coefficient in specified direction |
| dot-windshelter | Calculate shelter coefficient for all wind directions |
| dot-windsheltera | Calculates array of wind shelter coefficients in wdct... |
| dot-zeroplanedis | Calculate zero plane displacement |
| dtmcaerth | A one m resolution digital terrain dataset. |
| globclim | A dataset of global climate variables |
| habitats | A one m resolution dataset of habitat types |
| leafrfromalb | Derives leaf and ground reflectance from albedo |
| modelin | Create object of class microin |
| mosaicblend | Mosaics a list of overlapping SpatRasters blending overlap... |
| runbioclim | Generates microclimate equivalent of bioclim variables |
| runmicro | Runs the grid microclimate model |
| runmicro_big | runmicro on big areas |
| runpointmodel | Runs point microclimate model |
| runpointmodela | Runs point microclimate model over each grid cell of an array |
| runsnowmodel | Runs the grid snow model |
| snowenv | A 2.5 degree resolution global dataset indicating snow... |
| soilc | A dataset of soil characteristics. |
| soilmdistribute | Spatially distribute soil moisture by topographic wetness... |
| soilparameters | A table of soil parameters |
| soilparamsp | A dataset of vegetation parameters. |
| soiltemp | Calculates ground surface temperature (hourly) |
| subsetpointmodel | Subsets outputs from point microclimate model |
| subsetpointmodela | Subsets outputs from point microclimate model run over arrays |
| subsetsnowmodel | Subsets outputs of snow model |
| twostream | Applies two-stream radiation model |
| vegpfromhab | Generate vegpetation paramaters form habitat type |
| wind | Downscales wind |
| writetonc | Writes model output as ncdf4 file |
