Man pages for iml-assess/catchR
Analyse catch data and get catch-at-age matrices
| armatrix.cvs | Plot cvs used in armatrix model |
| armatrix.effects | Plot effect sizes |
| armatrix.fit | Model to smooth and fill in year*age matrix |
| armatrix.pred | Plot predicted armatrix model |
| armatrix.predobs | Plot predicted and observed armatrix model |
| armatrix.res | Plot residuals armatrix model |
| armatrix.res2 | Plot residuals armatrix model (dotplots) |
| armatrix.waa | Plot waa from armatrix model |
| cohort | Simple cohort strength calculation based on catch-at-age |
| correct.weight | species specific correction of weight in function of fish... |
| find.samples | Find samples |
| find.species | find species (the code or name used in a certain database) |
| fit.lw | fit log length-weight relationship by year or period |
| get.caa | Get catch-at-age results |
| get.cal | Get catch-at-length results |
| get.id | get sample id |
| get.samples | For each catch stratum, attach corresponding length-frequency... |
| logLik.armatrix | Log likelihood of armatrix object |
| multinom_fill | Fill gaps in age-length keys |
| outlier | Identify outliers based on the interquantile range |
| plotCatch | barplot for catches |
| print.armatrix | Print armatrix object |
| read.bio | Reads biological data |
| read.lf | Reads length-frequency data from dockside monitoring. |
| read.nafoA | Read NAFO 21A database data stored in a .csv file |
| read.nafoB | Read NAFO 21B data |
| read.ziff | read ZIFF files |
| roundFish | Roudn to the nearest x cam |
| spay | Standardized proportions at year |
| spya | Standardized proportions at age |
| theme_cod | ggplot theme for cod |
| theme_mackerel | ggplot theme for mackerel |
