API for immunogenomics/symphony
Efficient and Precise Single-Cell Reference Atlas Mapping
| Global functions | |
|---|---|
| buildReference | Man page Source code |
| buildReferenceFromHarmonyObj | Man page Source code |
| calcPerCellMappingMetric | Man page Source code |
| calcPerClusterMappingMetric | Man page Source code |
| calcknncorr | Man page Source code |
| calcknncorrWithinQuery | Man page Source code |
| calcknncorrWithinQueryBatch | Source code |
| compute_ref_cache | Source code |
| cosine_normalize_cpp | Source code |
| evaluate | Man page Source code |
| exp_mean | Source code |
| findVariableGenes | Man page Source code |
| get_betas | Source code |
| knnPredict | Man page Source code |
| knnPredictCos | Source code |
| log_vmr | Source code |
| mapQuery | Man page Source code |
| moe_correct_ref | Source code |
| normalizeCLR_dgc | Source code |
| normalizeData | Source code |
| pbmcs_exprs_small | Man page |
| pbmcs_meta_small | Man page |
| plotReference | Man page Source code |
| rowMeans | Source code |
| rowMeansWeighted_dgc | Source code |
| rowSDs | Man page Source code |
| rowSDsWeighted_dgc | Source code |
| rowSDs_dgc | Source code |
| rowVarSDs_dgc | Source code |
| rowVars | Source code |
| rowVarsStd | Source code |
| runPCAQueryAlone | Man page Source code |
| scaleData | Source code |
| scaleDataWithStats | Man page Source code |
| scaleRowsWithStats_dgc | Source code |
| scaleRows_dgc | Source code |
| soft_cluster | Source code |
| soft_kmeans | Source code |
| soft_kmeans_cpp | Source code |
| symphony | Man page |
| vargenes_vst | Man page Source code |
