Files in immunogenomics/symphony
Efficient and Precise Single-Cell Reference Atlas Mapping
.Rbuildignore
.gitattributes
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
R/RcppExports.R
R/buildReference.R
R/buildReferenceFromHarmonyObj.R
R/confidenceScores.R
R/data.R
R/findVariableGenes.R
R/globals.R
R/knncorr.R
R/mapQuery.R
R/plotReference.R
R/symphony-package.R
R/utils.R
README.Rmd
README.md
cran-comments.md
data/pbmcs_exprs_small.rda
data/pbmcs_meta_small.rda
man/buildReference.Rd
man/buildReferenceFromHarmonyObj.Rd
man/calcPerCellMappingMetric.Rd
man/calcPerClusterMappingMetric.Rd
man/calcknncorr.Rd
man/calcknncorrWithinQuery.Rd
man/evaluate.Rd
man/figures/._symphony_logo.png
man/figures/README-pressure-1.png
man/figures/symphony_logo.png
man/findVariableGenes.Rd
man/knnPredict.Rd
man/mapQuery.Rd
man/pbmcs_exprs_small.Rd
man/pbmcs_meta_small.Rd
man/plotReference.Rd
man/rowSDs.Rd
man/runPCAQueryAlone.Rd
man/scaleDataWithStats.Rd
man/symphony.Rd
man/vargenes_vst.Rd
pre-built_references/README.md
pre-built_references/colors.R
src/.gitignore
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/singlecellmethods.cpp
src/utils.cpp
vignettes/.gitignore
vignettes/Seurat.ipynb
vignettes/data/baron-mouse.rds
vignettes/data/exprs_norm_all.rds
vignettes/data/fetal_liver_exprs_5p.rds
vignettes/data/fetal_liver_meta_5p.rds
vignettes/data/meta_data_subtypes.csv
vignettes/data/pancreas_baron_human_exp.rds
vignettes/data/pancreas_baron_human_metadata.rds
vignettes/data/pancreas_baron_mouse_biomart_homologene_exp.rds
vignettes/data/pancreas_baron_mouse_metadata.rds
vignettes/libs.R
vignettes/pbmcs_tutorial.ipynb
vignettes/prebuilt_references_tutorial.ipynb
vignettes/quickstart_tutorial.Rmd
vignettes/utils.R
vignettes/utils_seurat.R
