Files in inbo/protocolshelper

Helper Functions to Manage Protocols

.github/CODE_OF_CONDUCT.md .github/CONTRIBUTING.md .github/ISSUE_TEMPLATE/issue_template.md .github/SUPPORT.md LICENSE.md NEWS.md R/add_captions.R R/add_dependencies.R R/add_label.R R/add_subprotocols.R R/check_all.R R/check_frontmatter.R R/check_helpers.R R/check_structure.R R/convert_docx.R R/create_protocol.R R/fence_all_chunks.R R/get_path_to_protocol.R R/get_protocol_type.R R/get_version_number.R R/insert_protocolsection.R R/load_protocolcheck.R R/misc.R R/protocolcheck_class.R R/render_protocol.R R/render_release.R R/set_tags.R R/setup.R R/update_news_release.R R/update_protocol.R R/update_version_number.R R/update_zenodo.R README.Rmd README.md cran-comments.md data-raw/code_for_internal_data.R inst/rmarkdown/homepage/index.Rmd inst/rmarkdown/templates/check_files_titles.R inst/rmarkdown/templates/template_generic_en/skeleton/01_abstract.Rmd inst/rmarkdown/templates/template_generic_en/skeleton/02_preparations.Rmd inst/rmarkdown/templates/template_generic_en/skeleton/03_visualized_procedure.Rmd inst/rmarkdown/templates/template_generic_en/skeleton/04_steps_procedure.Rmd inst/rmarkdown/templates/template_generic_en/skeleton/05_definitions.Rmd inst/rmarkdown/templates/template_generic_en/skeleton/06_references.Rmd inst/rmarkdown/templates/template_generic_en/skeleton/07_appendices.Rmd inst/rmarkdown/templates/template_generic_en/skeleton/08_subprotocols.Rmd inst/rmarkdown/templates/template_generic_en/skeleton/NEWS.md inst/rmarkdown/templates/template_generic_en/skeleton/skeleton.Rmd inst/rmarkdown/templates/template_generic_nl/skeleton/01_samenvatting.Rmd inst/rmarkdown/templates/template_generic_nl/skeleton/02_voorbereidingen.Rmd inst/rmarkdown/templates/template_generic_nl/skeleton/03_procedure_visueel.Rmd inst/rmarkdown/templates/template_generic_nl/skeleton/04_stappenplan.Rmd inst/rmarkdown/templates/template_generic_nl/skeleton/05_definities.Rmd inst/rmarkdown/templates/template_generic_nl/skeleton/06_referenties.Rmd inst/rmarkdown/templates/template_generic_nl/skeleton/07_appendices.Rmd inst/rmarkdown/templates/template_generic_nl/skeleton/08_subprotocols.Rmd inst/rmarkdown/templates/template_generic_nl/skeleton/NEWS.md inst/rmarkdown/templates/template_generic_nl/skeleton/skeleton.Rmd inst/rmarkdown/templates/template_sap_en/skeleton/01_dependencies.Rmd inst/rmarkdown/templates/template_sap_en/skeleton/02_subject.Rmd inst/rmarkdown/templates/template_sap_en/skeleton/03_principle.Rmd inst/rmarkdown/templates/template_sap_en/skeleton/04_materials.Rmd inst/rmarkdown/templates/template_sap_en/skeleton/05_reagents_solutions.Rmd inst/rmarkdown/templates/template_sap_en/skeleton/06_method.Rmd inst/rmarkdown/templates/template_sap_en/skeleton/07_calibration.Rmd inst/rmarkdown/templates/template_sap_en/skeleton/08_quality_assurance.Rmd inst/rmarkdown/templates/template_sap_en/skeleton/09_recipe.Rmd inst/rmarkdown/templates/template_sap_en/skeleton/10_safety.Rmd inst/rmarkdown/templates/template_sap_en/skeleton/11_reporting_archiving.Rmd inst/rmarkdown/templates/template_sap_en/skeleton/12_references.Rmd inst/rmarkdown/templates/template_sap_en/skeleton/13_appendices.Rmd inst/rmarkdown/templates/template_sap_en/skeleton/14_subprotocols.Rmd inst/rmarkdown/templates/template_sap_en/skeleton/NEWS.md inst/rmarkdown/templates/template_sap_en/skeleton/skeleton.Rmd inst/rmarkdown/templates/template_sap_nl/skeleton/01_afhankelijkheden.Rmd inst/rmarkdown/templates/template_sap_nl/skeleton/02_onderwerp.Rmd inst/rmarkdown/templates/template_sap_nl/skeleton/03_principe.Rmd inst/rmarkdown/templates/template_sap_nl/skeleton/04_benodigdheden.Rmd inst/rmarkdown/templates/template_sap_nl/skeleton/05_reagentia_oplossingen.Rmd inst/rmarkdown/templates/template_sap_nl/skeleton/06_werkwijze.Rmd inst/rmarkdown/templates/template_sap_nl/skeleton/07_kalibratie.Rmd inst/rmarkdown/templates/template_sap_nl/skeleton/08_kwaliteitszorg.Rmd inst/rmarkdown/templates/template_sap_nl/skeleton/09_methoderecept.Rmd inst/rmarkdown/templates/template_sap_nl/skeleton/10_veiligheid.Rmd inst/rmarkdown/templates/template_sap_nl/skeleton/11_rapportage_archivering.Rmd inst/rmarkdown/templates/template_sap_nl/skeleton/12_referenties.Rmd inst/rmarkdown/templates/template_sap_nl/skeleton/13_appendices.Rmd inst/rmarkdown/templates/template_sap_nl/skeleton/14_subprotocols.Rmd inst/rmarkdown/templates/template_sap_nl/skeleton/NEWS.md inst/rmarkdown/templates/template_sap_nl/skeleton/skeleton.Rmd inst/rmarkdown/templates/template_sfp_en/skeleton/01_dependencies.Rmd inst/rmarkdown/templates/template_sfp_en/skeleton/02_subject.Rmd inst/rmarkdown/templates/template_sfp_en/skeleton/03_scope.Rmd inst/rmarkdown/templates/template_sfp_en/skeleton/04_principle.Rmd inst/rmarkdown/templates/template_sfp_en/skeleton/05_skills.Rmd inst/rmarkdown/templates/template_sfp_en/skeleton/06_materials.Rmd inst/rmarkdown/templates/template_sfp_en/skeleton/07_workflow.Rmd inst/rmarkdown/templates/template_sfp_en/skeleton/08_quality_assurance.Rmd inst/rmarkdown/templates/template_sfp_en/skeleton/09_safety.Rmd inst/rmarkdown/templates/template_sfp_en/skeleton/10_summary.Rmd inst/rmarkdown/templates/template_sfp_en/skeleton/11_references.Rmd inst/rmarkdown/templates/template_sfp_en/skeleton/12_appendices.Rmd inst/rmarkdown/templates/template_sfp_en/skeleton/13_subprotocols.Rmd inst/rmarkdown/templates/template_sfp_en/skeleton/NEWS.md inst/rmarkdown/templates/template_sfp_en/skeleton/skeleton.Rmd inst/rmarkdown/templates/template_sfp_nl/skeleton/01_afhankelijkheden.Rmd inst/rmarkdown/templates/template_sfp_nl/skeleton/02_onderwerp.Rmd inst/rmarkdown/templates/template_sfp_nl/skeleton/03_beperkingen.Rmd inst/rmarkdown/templates/template_sfp_nl/skeleton/04_principe.Rmd inst/rmarkdown/templates/template_sfp_nl/skeleton/05_competenties.Rmd inst/rmarkdown/templates/template_sfp_nl/skeleton/06_benodigdheden.Rmd inst/rmarkdown/templates/template_sfp_nl/skeleton/07_werkwijze.Rmd inst/rmarkdown/templates/template_sfp_nl/skeleton/08_kwaliteitszorg.Rmd inst/rmarkdown/templates/template_sfp_nl/skeleton/09_veiligheid.Rmd inst/rmarkdown/templates/template_sfp_nl/skeleton/10_samenvatting.Rmd inst/rmarkdown/templates/template_sfp_nl/skeleton/11_referenties.Rmd inst/rmarkdown/templates/template_sfp_nl/skeleton/12_appendices.Rmd inst/rmarkdown/templates/template_sfp_nl/skeleton/13_subprotocols.Rmd inst/rmarkdown/templates/template_sfp_nl/skeleton/NEWS.md inst/rmarkdown/templates/template_sfp_nl/skeleton/skeleton.Rmd inst/rmarkdown/templates/template_sip_en/skeleton/01_dependencies.Rmd inst/rmarkdown/templates/template_sip_en/skeleton/02_specifications.Rmd inst/rmarkdown/templates/template_sip_en/skeleton/03_definitions_abbreviations.Rmd inst/rmarkdown/templates/template_sip_en/skeleton/04_skills.Rmd inst/rmarkdown/templates/template_sip_en/skeleton/05_principle.Rmd inst/rmarkdown/templates/template_sip_en/skeleton/06_devices_materials.Rmd inst/rmarkdown/templates/template_sip_en/skeleton/07_reagents_solutions.Rmd inst/rmarkdown/templates/template_sip_en/skeleton/08_usage.Rmd inst/rmarkdown/templates/template_sip_en/skeleton/09_quality_assurance.Rmd inst/rmarkdown/templates/template_sip_en/skeleton/10_safety.Rmd inst/rmarkdown/templates/template_sip_en/skeleton/11_archiving.Rmd inst/rmarkdown/templates/template_sip_en/skeleton/12_references.Rmd inst/rmarkdown/templates/template_sip_en/skeleton/13_appendices.Rmd inst/rmarkdown/templates/template_sip_en/skeleton/14_subprotocols.Rmd inst/rmarkdown/templates/template_sip_en/skeleton/NEWS.md inst/rmarkdown/templates/template_sip_en/skeleton/skeleton.Rmd inst/rmarkdown/templates/template_sip_nl/skeleton/01_afhankelijkheden.Rmd inst/rmarkdown/templates/template_sip_nl/skeleton/02_specificaties.Rmd inst/rmarkdown/templates/template_sip_nl/skeleton/03_definities_afkortingen.Rmd inst/rmarkdown/templates/template_sip_nl/skeleton/04_competenties.Rmd inst/rmarkdown/templates/template_sip_nl/skeleton/05_principe.Rmd inst/rmarkdown/templates/template_sip_nl/skeleton/06_apparatuur_materiaal.Rmd inst/rmarkdown/templates/template_sip_nl/skeleton/07_reagentia_oplossingen.Rmd inst/rmarkdown/templates/template_sip_nl/skeleton/08_gebruik.Rmd inst/rmarkdown/templates/template_sip_nl/skeleton/09_kwaliteitszorg.Rmd inst/rmarkdown/templates/template_sip_nl/skeleton/10_veiligheid.Rmd inst/rmarkdown/templates/template_sip_nl/skeleton/11_archivering.Rmd inst/rmarkdown/templates/template_sip_nl/skeleton/12_referenties.Rmd inst/rmarkdown/templates/template_sip_nl/skeleton/13_appendices.Rmd inst/rmarkdown/templates/template_sip_nl/skeleton/14_subprotocols.Rmd inst/rmarkdown/templates/template_sip_nl/skeleton/NEWS.md inst/rmarkdown/templates/template_sip_nl/skeleton/skeleton.Rmd inst/rmarkdown/templates/template_sop_en/skeleton/01_dependencies.Rmd inst/rmarkdown/templates/template_sop_en/skeleton/02_subject.Rmd inst/rmarkdown/templates/template_sop_en/skeleton/03_definitions_abbreviations.Rmd inst/rmarkdown/templates/template_sop_en/skeleton/04_skills.Rmd inst/rmarkdown/templates/template_sop_en/skeleton/05_process.Rmd inst/rmarkdown/templates/template_sop_en/skeleton/06_description_steps.Rmd inst/rmarkdown/templates/template_sop_en/skeleton/07_safety.Rmd inst/rmarkdown/templates/template_sop_en/skeleton/08_references.Rmd inst/rmarkdown/templates/template_sop_en/skeleton/09_appendices.Rmd inst/rmarkdown/templates/template_sop_en/skeleton/10_subprotocols.Rmd inst/rmarkdown/templates/template_sop_en/skeleton/NEWS.md inst/rmarkdown/templates/template_sop_en/skeleton/skeleton.Rmd inst/rmarkdown/templates/template_sop_nl/skeleton/01_afhankelijkheden.Rmd inst/rmarkdown/templates/template_sop_nl/skeleton/02_onderwerp.Rmd inst/rmarkdown/templates/template_sop_nl/skeleton/03_definities_afkortingen.Rmd inst/rmarkdown/templates/template_sop_nl/skeleton/04_competenties.Rmd inst/rmarkdown/templates/template_sop_nl/skeleton/05_proces.Rmd inst/rmarkdown/templates/template_sop_nl/skeleton/06_werkwijze.Rmd inst/rmarkdown/templates/template_sop_nl/skeleton/07_veiligheid.Rmd inst/rmarkdown/templates/template_sop_nl/skeleton/08_referenties.Rmd inst/rmarkdown/templates/template_sop_nl/skeleton/09_appendices.Rmd inst/rmarkdown/templates/template_sop_nl/skeleton/10_subprotocols.Rmd inst/rmarkdown/templates/template_sop_nl/skeleton/NEWS.md inst/rmarkdown/templates/template_sop_nl/skeleton/skeleton.Rmd inst/rmarkdown/templates/template_spp_en/skeleton/01_dependencies.Rmd inst/rmarkdown/templates/template_spp_en/skeleton/02_subject.Rmd inst/rmarkdown/templates/template_spp_en/skeleton/03_materials.Rmd inst/rmarkdown/templates/template_spp_en/skeleton/04_method.Rmd inst/rmarkdown/templates/template_spp_en/skeleton/05_quality_assurance.Rmd inst/rmarkdown/templates/template_spp_en/skeleton/06_safety.Rmd inst/rmarkdown/templates/template_spp_en/skeleton/07_references.Rmd inst/rmarkdown/templates/template_spp_en/skeleton/08_appendices.Rmd inst/rmarkdown/templates/template_spp_en/skeleton/09_subprotocols.Rmd inst/rmarkdown/templates/template_spp_en/skeleton/NEWS.md inst/rmarkdown/templates/template_spp_en/skeleton/skeleton.Rmd inst/rmarkdown/templates/template_spp_nl/skeleton/01_afhankelijkheden.Rmd inst/rmarkdown/templates/template_spp_nl/skeleton/02_onderwerp.Rmd inst/rmarkdown/templates/template_spp_nl/skeleton/03_benodigdheden.Rmd inst/rmarkdown/templates/template_spp_nl/skeleton/04_werkwijze.Rmd inst/rmarkdown/templates/template_spp_nl/skeleton/05_kwaliteitszorg.Rmd inst/rmarkdown/templates/template_spp_nl/skeleton/06_veiligheid.Rmd inst/rmarkdown/templates/template_spp_nl/skeleton/07_referenties.Rmd inst/rmarkdown/templates/template_spp_nl/skeleton/08_appendices.Rmd inst/rmarkdown/templates/template_spp_nl/skeleton/09_subprotocols.Rmd inst/rmarkdown/templates/template_spp_nl/skeleton/NEWS.md inst/rmarkdown/templates/template_spp_nl/skeleton/skeleton.Rmd man/add_captions.Rd man/add_dependencies.Rd man/add_label.Rd man/add_one_subprotocol.Rd man/add_subprotocols.Rd man/check_all.Rd man/check_all_author_info.Rd man/check_frontmatter.Rd man/check_structure.Rd man/convert_docx_to_rmd.Rd man/create_from_docx.Rd man/create_protocol.Rd man/create_protocol_code.Rd man/get_path_to_protocol.Rd man/get_protocol_type.Rd man/get_protocolnumbers.Rd man/get_short_titles.Rd man/get_version_number.Rd man/increment_version_number.Rd man/insert_protocolsection.Rd man/protocolcheck.Rd man/render_protocol.Rd man/update_protocol.Rd man/update_version_number.Rd man/validate_orcid.Rd tests/testdata/result_captions.Rmd tests/testdata/test_captions.Rmd tests/testthat.R tests/testthat/setup.R tests/testthat/test_add_captions.R tests/testthat/test_add_dependencies.R tests/testthat/test_check_all.R tests/testthat/test_check_frontmatter.R tests/testthat/test_check_structure.R tests/testthat/test_get_short_titles.R tests/testthat/test_increment_version_number.R tests/testthat/test_insert_protocolsection.R tests/testthat/test_render_protocol.R tests/testthat/test_update_protocol.R tests/testthat/test_update_zenodo.R tests/testthat/test_workflow.R