Files in ingewortel/celltrackR
Motion Trajectory Analysis
.Rbuildignore
.editorconfig
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/revcheck.yml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/angle-functions.R
R/celltrackR-package.R
R/cluster-functions.R
R/data-structures.R
R/datasets.R
R/functions.R
R/immunemap-integration.R
R/internal.R
R/plotting-tracks.R
R/simulate-tracks.R
R/subtracks.R
R/track-measures.R
R/track-set-transformations.R
README.Rmd
README.md
celltrackR.Rproj
cran-comments.md
data/BCells.rda
data/Neutrophils.rda
data/TCells.rda
docs/Makefile
docs/bootstrapscript.html
docs/img/.gitignore
docs/img/cheatsheet.pdf
docs/img/web-img_Analysis.png
docs/img/web-img_Cluster.png
docs/img/web-img_QC.png
docs/img/web-img_Read.png
docs/img/web-img_Simulation.png
docs/img/web-img_data-QC.png
docs/index.html
docs/navbar.html
docs/page-header.html
docs/vignettes-out/QC-tmp.html
docs/vignettes-out/QC.html
docs/vignettes-out/ana-methods-tmp.html
docs/vignettes-out/ana-methods.html
docs/vignettes-out/clustering-tmp.html
docs/vignettes-out/clustering.html
docs/vignettes-out/data-QC-tmp.html
docs/vignettes-out/data-QC.html
docs/vignettes-out/reading-converting-data-tmp.html
docs/vignettes-out/reading-converting-data.html
docs/vignettes-out/simulation-tmp.html
docs/vignettes-out/simulation.html
docs/vignettes/QC.html
docs/vignettes/ana-methods.html
docs/vignettes/clustering.html
docs/vignettes/data-QC.html
docs/vignettes/reading-converting-data.html
docs/vignettes/simulation.html
inst/CITATION
inst/extdata/BCellsRaw.rda
inst/extdata/NeutrophilsRaw.rda
inst/extdata/TCellsRaw.rda
inst/extdata/immunemap.json
inst/extdata/t-cells.txt
inst/learnmore/cheatsheet.pdf
man/AngleAnalysis.Rd
man/BCells.Rd
man/Neutrophils.Rd
man/ReadImmuneMap.Rd
man/TCells.Rd
man/TrackMeasures.Rd
man/aggregate.tracks.Rd
man/analyzeCellPairs.Rd
man/analyzeStepPairs.Rd
man/angleCells.Rd
man/angleSteps.Rd
man/angleToDir.Rd
man/angleToPlane.Rd
man/angleToPoint.Rd
man/applyStaggered.Rd
man/as.data.frame.tracks.Rd
man/as.list.tracks.Rd
man/as.tracks.data.frame.Rd
man/beaucheminTrack.Rd
man/bootstrapTrack.Rd
man/boundingBox.Rd
man/brownianTrack.Rd
man/cellPairs.Rd
man/celltrackR.Rd
man/cheatsheet.Rd
man/clusterTracks.Rd
man/distanceCells.Rd
man/distanceSteps.Rd
man/distanceToPlane.Rd
man/distanceToPoint.Rd
man/figures/README-unnamed-chunk-4-1.png
man/figures/README-unnamed-chunk-4-2.png
man/figures/README-unnamed-chunk-5-1.png
man/figures/README-unnamed-chunk-6-1.png
man/figures/README-unnamed-chunk-7-1.png
man/figures/README-unnamed-chunk-8-1.png
man/filterTracks.Rd
man/get.immap.metadata.Rd
man/getFeatureMatrix.Rd
man/hotellingsTest.Rd
man/interpolateTrack.Rd
man/maxTrackLength.Rd
man/normalizeToDuration.Rd
man/normalizeTracks.Rd
man/pairsByTime.Rd
man/plot.tracks.Rd
man/plot3d.Rd
man/plotTrackMeasures.Rd
man/prefixes.Rd
man/projectDimensions.Rd
man/read.tracks.csv.Rd
man/repairGaps.Rd
man/selectSteps.Rd
man/selectTracks.Rd
man/simulateTracks.Rd
man/sort.tracks.Rd
man/splitTrack.Rd
man/staggered.Rd
man/stepPairs.Rd
man/subsample.Rd
man/subtracks.Rd
man/subtracksByTime.Rd
man/timePoints.Rd
man/timeStep.Rd
man/trackFeatureMap.Rd
man/tracks.Rd
man/vecAngle.Rd
man/wrapTrack.Rd
tests/testthat.R
tests/testthat/immunemap.json
tests/testthat/ref_tracks.RData
tests/testthat/ref_tracks.csv
tests/testthat/ref_tracks_blank_line_sep.csv
tests/testthat/test1D.R
tests/testthat/testAngleFunctions.R
tests/testthat/testAngleInput.R
tests/testthat/testBasics.R
tests/testthat/testBorderCases.R
tests/testthat/testClusterFunctions.R
tests/testthat/testDataStructures.R
tests/testthat/testImmuneMapIntegration.R
tests/testthat/testLoadingTracks.R
tests/testthat/testNumerics.R
tests/testthat/testSim.R
vignettes/.gitignore
vignettes/QC.Rmd
vignettes/ana-methods.Rmd
vignettes/clustering.Rmd
vignettes/data-QC.Rmd
vignettes/reading-converting-data.Rmd
vignettes/simulation.Rmd
