Files in ingmbioinfo/combiroc
Selection and Ranking of Omics Biomarkers Combinations Made Easy
.gitattributes
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/r.yml
.gitignore
DESCRIPTION
LICENCE.md
LICENSE
NAMESPACE
NEWS.md
R/combi.R
R/combi_score.R
R/combiroc_long.R
R/combs_with.R
R/demo_data.R
R/demo_unclassified_data.R
R/examples/combi_example.R
R/examples/combi_score_example.R
R/examples/combiroc_long_example.R
R/examples/combs_with_example.R
R/examples/demo_data_example.R
R/examples/demo_unclassified_data_example.R
R/examples/load_data_example.R
R/examples/markers_distribution_example.R
R/examples/ranked_combs_example.R
R/examples/roc_reports_example.R
R/examples/seurat_to_combiroc_example.R
R/examples/show_markers_example.R
R/examples/single_markers_statistics_example.R
R/load_data.R
R/markers_distribution.R
R/ranked_combs.R
R/roc_reports.R
R/seurat_to_combiroc.R
R/show_markers.R
R/single_markers_statistics.R
README.md
_pkgdown.yml
codecov.yml
combiroc.Rproj
data/demo_data.rda
data/demo_unclassified_data.rda
inst/external_code/signature_score.R
inst/precomp/nk_degs
inst/precomp/reports_metrics.rds
inst/precomp/rmks_table_sub.rds
inst/precomp/train.rds
inst/precomp/train_sub.rds
inst/precomp/train_tab.rds
inst/precomp/train_tab_sub.rds
inst/www/combiroc.png
man/combi.Rd
man/combi_score.Rd
man/combiroc_long.Rd
man/combs_with.Rd
man/demo_data.Rd
man/demo_unclassified_data.Rd
man/figures/combiroc.png
man/load_data.Rd
man/markers_distribution.Rd
man/ranked_combs.Rd
man/roc_reports.Rd
man/seurat_to_combiroc.Rd
man/show_markers.Rd
man/single_markers_statistics.Rd
tests/testthat.R
tests/testthat/setuptests_combiroc.R
tests/testthat/test-combi.R
tests/testthat/test-combiroc_long.R
tests/testthat/test-combs_with.R
tests/testthat/test-load_data.R
tests/testthat/test-markers_distribution.R
tests/testthat/test-ranked_combs.R
tests/testthat/test-roc_reports.R
tests/testthat/test-show_markers.R
tests/testthat/test-single_markers_statistics.R
vignettes/.gitignore
vignettes/FeaturePlot1.png
vignettes/atlas_dimplot.png
vignettes/cbmc_NK_c172173_combiscore.png
vignettes/cbmc_NK_c172173_sigscore.png
vignettes/cbmc_dimplot.png
vignettes/cbmc_dimviolin_c172173.png
vignettes/cbmc_violin_randomcontrol.png
vignettes/cbmc_violinplots_genes.png
vignettes/combiroc.png
vignettes/combiroc_vignette_1.Rmd
vignettes/combiroc_vignette_2.Rmd
vignettes/distr_dens_plot.png
vignettes/pbmc3k_NK_c137550_combiscore.png
vignettes/pbmc3k_NK_c137550_sigscore.png
vignettes/pbmc3k_dimplot.png
vignettes/pbmc3k_dimviolin_c137550.png
vignettes/pbmc3k_violin_randomcontrol.png
vignettes/pbmc3k_violinplots_genes.png
vignettes/roc_curve.png
vignettes/roc_curve_vign1.png
vignettes/roc_curve_zoom.png
