Man pages for irisjingliu/RBsubtyping
What the Package Does (One Line, Title Case)
| Figure1a_ConsensusClustering_CNV | Plot Figure 1a Upper Panel right, Consensus Clustering CNV #... |
| Figure1a_ConsensusClustering_meth | Plot Figure 1a Upper Panel middle, Consensus Clustering DNA... |
| Figure1a_ConsensusClustering_mRNA | Plot Figure 1a Upper Panel left, Consensus Clustering mRNA |
| Figure1a_Plot_ClustersofClusters_CentroidClustering | Plot Figure 1a Middle and Bottom Panel, clusters of clusters... |
| Figure1b_Classification_CpGpredictor | Plot Figure 1b right Panel, classification of retinoblastoma... |
| Figure1b_Heatmap_9CpG_metharray | Plot Figure 1b left Panel, heatmap of 9 CpGs # to be finished |
| Figure1b_Scatter_CpGarray_pyroseq | Plot Figure 1b middle Panel, scatter of 9 CpGs correlating... |
| Figure1c_Plot_Clinical | Plot Figure 1c, Heatmap of different clinical features in two... |
| Figure2abcd | Plot Figure 2a-d plot of mutations #### to update |
| Figure2efg_Meth_FigureS2_Meth | Plot Figure 2e heatmap of differential methylated CpGs |
| Figure3a_volcanoPlot | Plot Figure 3a volcano plot of differential expressed genes... |
| Figure3b_heatmap | Plot Figure3b Heatmap |
| Figure3_limma | Figure 3a limma analysis to generate top_table_1 |
| Figure4 | Plot Figure 4 |
| Figure5 | Plot Figure 5 |
| Figure6c | Plot Figure 6 |
