Man pages for jackbibby1/SCPA
Single Cell Pathway Analysis
| compare_pathways | Use SCPA to compare gene sets |
| compare_sce | Use SCPA to compare pathways within a SingleCellExperiment... |
| compare_seurat | Use SCPA to compare pathways within a Seurat object |
| format_pathways | Format the output of msigdbr to use with SCPA |
| get_paths | Convert gene sets to filtered pathway list |
| parallel_comparison | Internal function for compare_pathways() |
| pathway_matrices | Create pathway matrices from gene sets |
| pipe | Pipe operator |
| plot_heatmap | Plot a heatmap of qvals from SCPA |
| plot_rank | Plot the rank of specific pathways from SCPA output |
| random_cells | Randomly sample cells (columns) |
| sce_extract | Extract data from a SingleCellExperiment object |
| seurat_extract | Extract Data From A Seurat Object |
| single_comparison | Internal function for compare_pathways() |
