Files in jae0/adapt
Areal Disease Analysis and Predicion Tools for COVID-19 epidemiological modelling and forecasting
DESCRIPTION
LICENSE
NAMESPACE
R/au_lookup_canada.R
R/data_health_regions_of_canada.R
R/data_nova_scotia.R
R/data_provinces_of_canada.R
R/folded_root.r
R/plot_model_fit.R
R/simulate.R
R/simulate_add_noise.R
R/simulate_data.R
R/sir_stan_model_code.R
R/stan_extract.R
R/stan_initialize.R
R/summary_adapt.r
README.md
inst/doc/Alberta/README.md
inst/doc/Alberta/fit_with_projections_and_stochastic_simulations.png
inst/doc/Alberta/fit_with_projections_infected.png
inst/doc/Alberta/fit_with_projections_mortalities.png
inst/doc/Alberta/fit_with_projections_recovered.png
inst/doc/Alberta/fit_with_projections_susceptible.png
inst/doc/Alberta/infected_affected.png
inst/doc/Alberta/reproductive_number.png
inst/doc/Alberta/reproductive_number_today.png
inst/doc/BC/README.md
inst/doc/BC/fit_with_projections_and_stochastic_simulations.png
inst/doc/BC/fit_with_projections_infected.png
inst/doc/BC/fit_with_projections_mortalities.png
inst/doc/BC/fit_with_projections_recovered.png
inst/doc/BC/fit_with_projections_susceptible.png
inst/doc/BC/infected_affected.png
inst/doc/BC/reproductive_number.png
inst/doc/BC/reproductive_number_today.png
inst/doc/Manitoba/README.md
inst/doc/Manitoba/fit_with_projections_and_stochastic_simulations.png
inst/doc/Manitoba/fit_with_projections_infected.png
inst/doc/Manitoba/fit_with_projections_mortalities.png
inst/doc/Manitoba/fit_with_projections_recovered.png
inst/doc/Manitoba/fit_with_projections_susceptible.png
inst/doc/Manitoba/infected_affected.png
inst/doc/Manitoba/reproductive_number.png
inst/doc/Manitoba/reproductive_number_today.png
inst/doc/NL/README.md
inst/doc/NL/fit_with_projections_and_stochastic_simulations.png
inst/doc/NL/fit_with_projections_infected.png
inst/doc/NL/fit_with_projections_mortalities.png
inst/doc/NL/fit_with_projections_recovered.png
inst/doc/NL/fit_with_projections_susceptible.png
inst/doc/NL/infected_affected.png
inst/doc/NL/reproductive_number.png
inst/doc/NL/reproductive_number_today.png
inst/doc/NWT/README.md
inst/doc/NWT/fit_with_projections_and_stochastic_simulations.png
inst/doc/NWT/fit_with_projections_infected.png
inst/doc/NWT/fit_with_projections_mortalities.png
inst/doc/NWT/fit_with_projections_recovered.png
inst/doc/NWT/fit_with_projections_susceptible.png
inst/doc/NWT/infected_affected.png
inst/doc/NWT/reproductive_number.png
inst/doc/NWT/reproductive_number_today.png
inst/doc/New Brunswick __ Zone 1 (Moncton area)/README.md
inst/doc/New Brunswick __ Zone 1 (Moncton area)/fit_with_projections_and_stochastic_simulations.png
inst/doc/New Brunswick __ Zone 1 (Moncton area)/fit_with_projections_infected.png
inst/doc/New Brunswick __ Zone 1 (Moncton area)/fit_with_projections_mortalities.png
inst/doc/New Brunswick __ Zone 1 (Moncton area)/fit_with_projections_recovered.png
inst/doc/New Brunswick __ Zone 1 (Moncton area)/fit_with_projections_susceptible.png
inst/doc/New Brunswick __ Zone 1 (Moncton area)/infected_affected.png
inst/doc/New Brunswick __ Zone 1 (Moncton area)/reproductive_number.png
inst/doc/New Brunswick __ Zone 1 (Moncton area)/reproductive_number_today.png
inst/doc/New Brunswick __ Zone 2 (Saint John area)/README.md
inst/doc/New Brunswick __ Zone 2 (Saint John area)/fit_with_projections_and_stochastic_simulations.png
inst/doc/New Brunswick __ Zone 2 (Saint John area)/fit_with_projections_infected.png
inst/doc/New Brunswick __ Zone 2 (Saint John area)/fit_with_projections_mortalities.png
inst/doc/New Brunswick __ Zone 2 (Saint John area)/fit_with_projections_recovered.png
inst/doc/New Brunswick __ Zone 2 (Saint John area)/fit_with_projections_susceptible.png
inst/doc/New Brunswick __ Zone 2 (Saint John area)/infected_affected.png
inst/doc/New Brunswick __ Zone 2 (Saint John area)/reproductive_number.png
inst/doc/New Brunswick __ Zone 2 (Saint John area)/reproductive_number_today.png
inst/doc/New Brunswick __ Zone 3 (Fredericton area)/README.md
inst/doc/New Brunswick __ Zone 3 (Fredericton area)/fit_with_projections_and_stochastic_simulations.png
inst/doc/New Brunswick __ Zone 3 (Fredericton area)/fit_with_projections_infected.png
inst/doc/New Brunswick __ Zone 3 (Fredericton area)/fit_with_projections_mortalities.png
inst/doc/New Brunswick __ Zone 3 (Fredericton area)/fit_with_projections_recovered.png
inst/doc/New Brunswick __ Zone 3 (Fredericton area)/fit_with_projections_susceptible.png
inst/doc/New Brunswick __ Zone 3 (Fredericton area)/infected_affected.png
inst/doc/New Brunswick __ Zone 3 (Fredericton area)/reproductive_number.png
inst/doc/New Brunswick __ Zone 3 (Fredericton area)/reproductive_number_today.png
inst/doc/New Brunswick/README.md
inst/doc/New Brunswick/fit_with_projections_and_stochastic_simulations.png
inst/doc/New Brunswick/fit_with_projections_infected.png
inst/doc/New Brunswick/fit_with_projections_mortalities.png
inst/doc/New Brunswick/fit_with_projections_recovered.png
inst/doc/New Brunswick/fit_with_projections_susceptible.png
inst/doc/New Brunswick/infected_affected.png
inst/doc/New Brunswick/reproductive_number.png
inst/doc/New Brunswick/reproductive_number_today.png
inst/doc/Nova Scotia __ Zone 1 - Western/README.md
inst/doc/Nova Scotia __ Zone 1 - Western/fit_with_projections_and_stochastic_simulations.png
inst/doc/Nova Scotia __ Zone 1 - Western/fit_with_projections_infected.png
inst/doc/Nova Scotia __ Zone 1 - Western/fit_with_projections_mortalities.png
inst/doc/Nova Scotia __ Zone 1 - Western/fit_with_projections_recovered.png
inst/doc/Nova Scotia __ Zone 1 - Western/fit_with_projections_susceptible.png
inst/doc/Nova Scotia __ Zone 1 - Western/infected_affected.png
inst/doc/Nova Scotia __ Zone 1 - Western/reproductive_number.png
inst/doc/Nova Scotia __ Zone 1 - Western/reproductive_number_today.png
inst/doc/Nova Scotia __ Zone 2 - Northern/README.md
inst/doc/Nova Scotia __ Zone 2 - Northern/fit_with_projections_and_stochastic_simulations.png
inst/doc/Nova Scotia __ Zone 2 - Northern/fit_with_projections_infected.png
inst/doc/Nova Scotia __ Zone 2 - Northern/fit_with_projections_mortalities.png
inst/doc/Nova Scotia __ Zone 2 - Northern/fit_with_projections_recovered.png
inst/doc/Nova Scotia __ Zone 2 - Northern/fit_with_projections_susceptible.png
inst/doc/Nova Scotia __ Zone 2 - Northern/infected_affected.png
inst/doc/Nova Scotia __ Zone 2 - Northern/reproductive_number.png
inst/doc/Nova Scotia __ Zone 2 - Northern/reproductive_number_today.png
inst/doc/Nova Scotia __ Zone 3 - Eastern/README.md
inst/doc/Nova Scotia __ Zone 3 - Eastern/fit_with_projections_and_stochastic_simulations.png
inst/doc/Nova Scotia __ Zone 3 - Eastern/fit_with_projections_infected.png
inst/doc/Nova Scotia __ Zone 3 - Eastern/fit_with_projections_mortalities.png
inst/doc/Nova Scotia __ Zone 3 - Eastern/fit_with_projections_recovered.png
inst/doc/Nova Scotia __ Zone 3 - Eastern/fit_with_projections_susceptible.png
inst/doc/Nova Scotia __ Zone 3 - Eastern/infected_affected.png
inst/doc/Nova Scotia __ Zone 3 - Eastern/reproductive_number.png
inst/doc/Nova Scotia __ Zone 3 - Eastern/reproductive_number_today.png
inst/doc/Nova Scotia __ Zone 4 - Central/README.md
inst/doc/Nova Scotia __ Zone 4 - Central/fit_with_projections_and_stochastic_simulations.png
inst/doc/Nova Scotia __ Zone 4 - Central/fit_with_projections_infected.png
inst/doc/Nova Scotia __ Zone 4 - Central/fit_with_projections_mortalities.png
inst/doc/Nova Scotia __ Zone 4 - Central/fit_with_projections_recovered.png
inst/doc/Nova Scotia __ Zone 4 - Central/fit_with_projections_susceptible.png
inst/doc/Nova Scotia __ Zone 4 - Central/infected_affected.png
inst/doc/Nova Scotia __ Zone 4 - Central/reproductive_number.png
inst/doc/Nova Scotia __ Zone 4 - Central/reproductive_number_today.png
inst/doc/Nova Scotia/README.md
inst/doc/Nova Scotia/fit_with_projections_and_stochastic_simulations.png
inst/doc/Nova Scotia/fit_with_projections_infected.png
inst/doc/Nova Scotia/fit_with_projections_mortalities.png
inst/doc/Nova Scotia/fit_with_projections_recovered.png
inst/doc/Nova Scotia/fit_with_projections_susceptible.png
inst/doc/Nova Scotia/infected_affected.png
inst/doc/Nova Scotia/reproductive_number.png
inst/doc/Nova Scotia/reproductive_number_today.png
inst/doc/Nunavut/README.md
inst/doc/Nunavut/fit_with_projections_and_stochastic_simulations.png
inst/doc/Nunavut/fit_with_projections_infected.png
inst/doc/Nunavut/fit_with_projections_mortalities.png
inst/doc/Nunavut/fit_with_projections_recovered.png
inst/doc/Nunavut/fit_with_projections_susceptible.png
inst/doc/Nunavut/infected_affected.png
inst/doc/Nunavut/reproductive_number.png
inst/doc/Nunavut/reproductive_number_today.png
inst/doc/Ontario __ Toronto/README.md
inst/doc/Ontario __ Toronto/fit_with_projections_and_stochastic_simulations.png
inst/doc/Ontario __ Toronto/fit_with_projections_infected.png
inst/doc/Ontario __ Toronto/fit_with_projections_mortalities.png
inst/doc/Ontario __ Toronto/fit_with_projections_recovered.png
inst/doc/Ontario __ Toronto/fit_with_projections_susceptible.png
inst/doc/Ontario __ Toronto/infected_affected.png
inst/doc/Ontario __ Toronto/reproductive_number.png
inst/doc/Ontario __ Toronto/reproductive_number_today.png
inst/doc/Ontario/README.md
inst/doc/Ontario/fit_with_projections_and_stochastic_simulations.png
inst/doc/Ontario/fit_with_projections_infected.png
inst/doc/Ontario/fit_with_projections_mortalities.png
inst/doc/Ontario/fit_with_projections_recovered.png
inst/doc/Ontario/fit_with_projections_susceptible.png
inst/doc/Ontario/infected_affected.png
inst/doc/Ontario/reproductive_number.png
inst/doc/Ontario/reproductive_number_today.png
inst/doc/PEI/README.md
inst/doc/PEI/fit_with_projections_and_stochastic_simulations.png
inst/doc/PEI/fit_with_projections_infected.png
inst/doc/PEI/fit_with_projections_mortalities.png
inst/doc/PEI/fit_with_projections_recovered.png
inst/doc/PEI/fit_with_projections_susceptible.png
inst/doc/PEI/infected_affected.png
inst/doc/PEI/reproductive_number.png
inst/doc/PEI/reproductive_number_today.png
inst/doc/Quebec __ Montréal/README.md
inst/doc/Quebec __ Montréal/fit_with_projections_and_stochastic_simulations.png
inst/doc/Quebec __ Montréal/fit_with_projections_infected.png
inst/doc/Quebec __ Montréal/fit_with_projections_mortalities.png
inst/doc/Quebec __ Montréal/fit_with_projections_recovered.png
inst/doc/Quebec __ Montréal/fit_with_projections_susceptible.png
inst/doc/Quebec __ Montréal/infected_affected.png
inst/doc/Quebec __ Montréal/reproductive_number.png
inst/doc/Quebec __ Montréal/reproductive_number_today.png
inst/doc/Quebec/README.md
inst/doc/Quebec/fit_with_projections_and_stochastic_simulations.png
inst/doc/Quebec/fit_with_projections_infected.png
inst/doc/Quebec/fit_with_projections_mortalities.png
inst/doc/Quebec/fit_with_projections_recovered.png
inst/doc/Quebec/fit_with_projections_susceptible.png
inst/doc/Quebec/infected_affected.png
inst/doc/Quebec/reproductive_number.png
inst/doc/Quebec/reproductive_number_today.png
inst/doc/README.md
inst/doc/Saskatchewan/README.md
inst/doc/Saskatchewan/fit_with_projections_and_stochastic_simulations.png
inst/doc/Saskatchewan/fit_with_projections_infected.png
inst/doc/Saskatchewan/fit_with_projections_mortalities.png
inst/doc/Saskatchewan/fit_with_projections_recovered.png
inst/doc/Saskatchewan/fit_with_projections_susceptible.png
inst/doc/Saskatchewan/infected_affected.png
inst/doc/Saskatchewan/reproductive_number.png
inst/doc/Saskatchewan/reproductive_number_today.png
inst/doc/Yukon/README.md
inst/doc/Yukon/fit_with_projections_and_stochastic_simulations.png
inst/doc/Yukon/fit_with_projections_infected.png
inst/doc/Yukon/fit_with_projections_mortalities.png
inst/doc/Yukon/fit_with_projections_recovered.png
inst/doc/Yukon/fit_with_projections_susceptible.png
inst/doc/Yukon/infected_affected.png
inst/doc/Yukon/reproductive_number.png
inst/doc/Yukon/reproductive_number_today.png
inst/scripts/parameter_estimation_SIR_provinces_of_Canada.R
inst/scripts/parameter_estimation_SIR_selected_health_regions_of_Canada.R
inst/scripts/test_example_parameter_estimation_SIR.R
inst/scripts/test_example_parameter_estimation_SIR_nimble_nova_scotia.R
inst/scripts/test_example_parameter_estimation_SIR_nova_scotia.R
man/data_nova_scotia.Rd
man/data_provinces_of_canada.Rd
man/folded_root.Rd
man/plot_model_fit.Rd
man/simulate.Rd
man/simulate_add_noise.Rd
man/simulate_data.Rd
man/sir_stan_model_code.Rd
man/summary_adapt.Rd
