Files in jae0/carstm
Conditional autoregressive spatiotemporal models with a focus upon fisheries stock assessment
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/adjacency_matrix_to_nb.R
R/carstm_filenames.R
R/carstm_map.R
R/carstm_map_interactive.R
R/carstm_model.R
R/carstm_model_gam.R
R/carstm_model_glm.R
R/carstm_model_inla.R
R/carstm_plot_map.R
R/carstm_plot_marginaleffects.R
R/carstm_posterior_predictive_check.R
R/carstm_posterior_simulations.R
R/carstm_posterior_simulations_summary.R
R/carstm_prior_posterior_compare.R
R/carstm_results_unpack.R
R/carstm_spline.R
R/carstm_test_inla.R
R/features_to_add.R
R/format_results.R
R/inla_get_indices.R
R/inla_hyperparameters.R
R/inla_version.R
R/inverse.logit.r
R/nb_to_adjacency_matrix.R
R/nodes.R
R/parse_formula.R
R/posterior_summary.R
R/scaling_factor_bym2.R
R/scottish_lip_cancer_data.R
R/split_vector2matrix.R
R/toy_spatial_data.R
README.md
docs/carstm_methods.md
docs/carstm_methods.pdf
docs/example_comparisons_r.md
docs/media/bias_depth_strata.png
docs/media/bias_depth_year.png
docs/media/bias_temp_strata.png
docs/media/bias_temp_year.png
docs/media/habitat_car_degreeday.png
docs/media/habitat_car_depth.png
docs/media/habitat_car_pred2017.png
docs/media/habitat_car_temp.png
docs/media/habitat_gam_degreeday.png
docs/media/habitat_gam_depth.png
docs/media/habitat_gam_pred2017.png
docs/media/habitat_gam_temp.png
docs/media/habitat_glm_degreeday.png
docs/media/habitat_glm_depth.png
docs/media/habitat_glm_pred2017.png
docs/media/habitat_glm_temp.png
docs/media/habitat_inla_car_yr_pred2017.png
docs/media/habitat_inla_degreeday.png
docs/media/habitat_inla_depth.png
docs/media/habitat_inla_pred2017.png
docs/media/habitat_inla_temp.png
docs/media/habitat_timeseries.png
docs/media/histogram_sweptarea_bias.png
docs/media/histogram_total_number.png
docs/media/histogram_total_weight.png
docs/media/histogram_towlength_bias.png
docs/media/inla_depth_number.png
docs/media/inla_depth_number_car1.png
docs/media/inla_temp_number.png
docs/media/inla_temp_number_car1.png
docs/media/lmGaussian_vs_lmPoisson.png
docs/media/map_abundance_inla_tz.png
docs/media/mean_variance.png
docs/media/posterior_phi_car1.png
docs/media/simplemap.png
docs/media/simplemap_overview.png
docs/media/sppoly_temperature.html
docs/media/sppoly_temperature_files/37.jpg
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docs/media/sppoly_temperature_files/44_005.jpg
docs/media/sppoly_temperature_files/fill.css
docs/media/sppoly_temperature_files/htmlwidgets.js
docs/media/sppoly_temperature_files/jquery-3.6.0.min.js
docs/media/sppoly_temperature_files/leaflet-providers-plugin.js
docs/media/sppoly_temperature_files/leaflet-providers_2.0.0.js
docs/media/sppoly_temperature_files/leaflet.css
docs/media/sppoly_temperature_files/leaflet.js
docs/media/sppoly_temperature_files/leaflet_002.js
docs/media/sppoly_temperature_files/leafletfix.css
docs/media/sppoly_temperature_files/proj4.min.js
docs/media/sppoly_temperature_files/proj4leaflet.js
docs/media/sppoly_temperature_files/rstudio_leaflet.css
docs/media/temperature_prediction.png
docs/media/temperature_spatialeffect.png
docs/media/timeseries_envir_car_towcomparisons.png
docs/media/timeseries_envir_towcomparisons.png
docs/media/timeseries_stranal_towcomparisons.png
inst/extdata/aegis_bathymetry.Rdata
inst/extdata/aegis_space_test.Rdata
inst/extdata/aegis_spacetime_test.RDS
inst/extdata/aegis_spacetime_test.Rdata
inst/scripts/README.md
inst/scripts/example_temperature_carstm.md
inst/scripts/test_data.R
inst/scripts/test_inla.R
