| SEIR_odes |
Source code
|
| calculate_all_incidences |
Source code
|
| calculate_all_incidences_logistic |
Source code
|
| calculate_all_incidences_logistic_scale_reporting |
Source code
|
| calculate_confirmation_incidence |
Source code
|
| calculate_infection_incidence_time |
Source code
|
| calculate_infection_prevalence_hubei |
Source code
|
| calculate_infection_prevalence_imported |
Source code
|
| calculate_infection_prevalence_local |
Source code
|
| calculate_local_from_import_infections |
Source code
|
| calculate_local_infections |
Source code
|
| calculate_onset_incidence |
Source code
|
| calculate_onset_probs_lnorm |
Source code
|
| calculate_onset_probs_weibull |
Source code
|
| calculate_preconfirmation_prevalence |
Source code
|
| calculate_preconfirmation_prevalence_from_infections |
Source code
|
| calculate_preconfirmation_prevalence_vector |
Source code
|
| calculate_probs_notrecovered |
Source code
|
| calculate_probs_preconfirmation |
Source code
|
| calculate_probs_presymptomatic_lnorm |
Source code
|
| calculate_probs_presymptomatic_weibull |
Source code
|
| calculate_reporting_delay_matrix |
Source code
|
| calculate_reporting_delay_matrix_constant |
Source code
|
| calculate_serial_interval_probs |
Source code
|
| calculate_unrecovered_prevalence |
Source code
|
| convert_date_to_integer |
Source code
|
| create_export_prob_matrix |
Source code
|
| create_incubation_prior |
Source code
|
| create_many_province_partab |
Source code
|
| create_model_func |
Source code
|
| create_model_func_provinces |
Source code
|
| create_model_func_provinces_fixed |
Source code
|
| create_prior_startdate |
Source code
|
| create_random_effects_rlocal |
Source code
|
| create_random_effects_rlocal2 |
Source code
|
| daily_exp_interval_cpp |
Source code
|
| daily_sigmoid_interval_cpp |
Source code
|
| find_all_prior_sds |
Source code
|
| find_prior_sd |
Source code
|
| fit_lnorm_normal_prior |
Source code
|
| fit_weibull_gamma_prior |
Source code
|
| fit_weibull_normal_prior |
Source code
|
| gamma_pars_from_mean_sd |
Source code
|
| generate_confirmation_delays |
Source code
|
| generate_prediction_intervals |
Source code
|
| generate_start_tab |
Source code
|
| get_index_par |
Source code
|
| get_quantiles |
Source code
|
| hello |
Man page
|
| local_travel_matrix_precalc |
Source code
|
| logistic_growth |
Source code
|
| plot_confirm_delay |
Source code
|
| plot_incubation_period |
Source code
|
| plot_model_fit |
Source code
|
| plot_posteriors |
Source code
|
| plot_reporting_landscape |
Source code
|
| plot_simulations |
Source code
|
| prob_arrive_pre_symptoms |
Source code
|
| prob_arrive_pre_symptoms_vector |
Source code
|
| prob_daily_arrival |
Source code
|
| prob_leave_on_day |
Source code
|
| prob_leave_pre_symptoms |
Source code
|
| prob_leave_pre_symptoms_vector |
Source code
|
| prob_left_pre_sympt |
Source code
|
| prob_not_left_per_day |
Source code
|
| probs_not_left_by_day |
Source code
|
| simulate_observed_data_provinces |
Source code
|
| simulate_observed_data_single |
Source code
|
| solve_seir_model |
Source code
|
| weibull_mode |
Source code
|
