Man pages for jarad/FluSight
Utility functions for the CDC FluSight competition
| arrange_entry | Arrange an entry for consistency |
| construct_filename | Construct the file name |
| create_onset | Creates observed truth for seasonal onset |
| create_peak | Creates observed truth for seasonal peak values |
| create_seasonal | Creates observed truth for seasonal targets |
| create_truth | Creates observed truth to score entry against |
| create_week | Creates observed truth for 1-4 week ahead prediction |
| expand_percent | Expands truth for percents |
| expand_truth | Creates a range of bins to score |
| expand_week | Expands truth for weeks |
| FluSight | FluSight: a package for CDC Flu Competition functions |
| full_entry | A full valid entry for national ILI forecasting |
| full_entry_hosp | A full valid entry for hospitalization forecasting |
| full_entry_hosp_score | A full valid hospitalization forecast entry containing... |
| full_entry_score | A full valid national ILINet entry containing forecast week... |
| full_entry_state | A full valid entry for state ILI forecasting |
| full_entry_state_score | A full valid state ILI forecast entry containing forecast... |
| generate_point_forecast | Generate a point forecast from probabilistic forecast |
| generate_point_forecasts | Generate point forecasts for all locations and targets |
| get_week | Get the surveillance week |
| hosp_truth_1617 | Observed FluSurv-Net hospitalizations truth for 2016/2017... |
| minimal_entry | A minimal valid entry for national ILI forecasting |
| normalize_probs | Normalize probabilistic predictions |
| past_baselines | Past ILINet baselines for all locations |
| plot_cdc | Plots CDC Data |
| plot_onset | Plots Onset Forecasts |
| plot_peakper | Plots Peak Percentage Forecasts |
| plot_peakweek | Plots Peak Week Forecasts |
| plot_weekahead | Plots Week Ahead Forecasts |
| read_entry | Read in a csv entry file |
| remove_invalid | Remove invalid predicted probabilities for scoring |
| score_entry | Scores an entry |
| state_truth_1617 | Observed state ILI truth for 2016/2017 influenza season |
| truth_1516 | Observed national ILINet truth for 2015/2016 influenza season |
| valid_exp_truth | Expanded national ILINet truth for 2015/2016 influenza season |
| valid_ILI | A valid ILINet submission |
| valid_ILI_state | A valid state ILINet submission |
| valid_observe_hosp | A valid FluSurv-NET submission |
| verify_agegrp | Verify the age groups in hospitalization forecasts |
| verify_bins | Verify bins are correct |
| verify_colnames | Verify the column names of an entry |
| verify_entry | Verify entry stored as an R data.frame |
| verify_entry_file | Verify an entry file |
| verify_hosp | Verify an observed hospitalizations file |
| verify_ILI | Verify supplied weighted ILI data |
| verify_ILI_colnames | Verify supplied weighted ILI data columns |
| verify_ILI_location | Verify supplied weighted ILI regions |
| verify_locations | Verify the locations |
| verify_point | Verify validity of point predictions |
| verify_probabilities | Verify the entry probabilities |
| verify_targets | Verify targets are correct |
| verify_types | Verify types are correct |
| verify_units | Verify units are correct |
| visualize_forecast | Plots a CDC FluView Submission |
| write_entry | Write an entry to a csv file |
| write_valid_entry | Write a valid entry to a csv file |
