Files in jarrodhadfield/MCMCglmm
MCMC Generalised Linear Mixed Models

.Rbuildignore

.Rinstignore

DESCRIPTION

NAMESPACE

R/.Rapp.history

R/Ddivergence.R R/Dexpressions.R R/Dtensor.R R/KPPM.R R/MCMCglmm.R R/Ptensor.R R/Tri2M.R R/buildV.R R/buildZ.R R/close.bracket.R R/commutation.R R/dcmvnorm.R R/find.components.R R/gelman.prior.R R/inverseA.R R/knorm.R R/krzanowski.test.R R/kunif.R R/list2bdiag.R R/me.R R/mterms.R R/mult.memb.R R/path.R R/pkk.R R/plot.MCMCglmm.R R/plotsubspace.R R/posterior.ante.R R/posterior.cor.R R/posterior.evals.R R/posterior.inverse.R R/posterior.mode.R R/predict.MCMCglmm.R R/priorformat.R R/prunePed.R R/rIW.R R/rante.R R/rbv.R R/residuals.MCMCglmm.R R/rtcmvnorm.R R/rtnorm.R R/simulate.MCMCglmm.R R/sir.R R/sm2asreml.R R/spl.R R/split.direct.sum.R R/summary.MCMCglmm.R

data/BTdata.tab

data/BTped.tab

data/PlodiaPO.tab

data/PlodiaR.tab

data/PlodiaRB.tab

data/SShorns.tab

inst/CITATION

man/.Rapp.history

man/BTdata.Rd man/BTped.Rd man/Ddivergence.Rd man/Dexpressions.Rd man/Dtensor.Rd man/KPPM.Rd man/MCMCglmm.Rd man/MCMCglmmPackage.Rd man/PlodiaPO.Rd man/PlodiaR.Rd man/PlodiaRB.Rd man/Ptensor.Rd man/SShorns.Rd man/Tri2M.Rd man/at.level.Rd man/at.set.Rd man/buildV.Rd man/commutation.Rd man/dcmvnorm.Rd man/evalDtensor.Rd man/gelman.prior.Rd man/inverseA.Rd man/knorm.Rd man/krzanowski.test.Rd man/kunif.Rd man/list2bdiag.Rd man/me.Rd man/mult.memb.Rd man/path.Rd man/pkk.Rd man/plot.MCMCglmm.Rd man/plotsubspace.Rd man/posterior.ante.Rd man/posterior.cor.Rd man/posterior.evals.Rd man/posterior.inverse.Rd man/posterior.mode.Rd man/predict.MCMCglmm.Rd man/prunePed.Rd man/rIW.Rd man/rbv.Rd man/residuals.MCMCglmm.Rd man/rtcmvnorm.Rd man/rtnorm.Rd man/simulate.MCMCglmm.Rd man/sir.Rd man/sm2asreml.Rd man/spl.Rd man/summary.MCMCglmm.Rd

src/MCMCglmm.cc

src/MCMCglmm.h

src/MCMCglmm.o

src/MCMCglmm.so

src/MCMCglmm_init.c

src/MCMCglmm_init.o

src/MCMCglmmcc.h

src/cs.h

src/cs_add.c

src/cs_add.o

src/cs_addR.c

src/cs_addR.o

src/cs_amd.c

src/cs_amd.o

src/cs_cbind.c

src/cs_cbind.o

src/cs_chol.c

src/cs_chol.o

src/cs_cholsol.c

src/cs_cholsol.o

src/cs_compress.c

src/cs_compress.o

src/cs_counts.c

src/cs_counts.o

src/cs_cov2cor.c

src/cs_cov2cor.o

src/cs_cumsum.c

src/cs_cumsum.o

src/cs_dcmvnorm.c

src/cs_dcmvnorm.o

src/cs_dense.c

src/cs_dense.o

src/cs_dense0.c

src/cs_dense0.o

src/cs_dfs.c

src/cs_dfs.o

src/cs_directsum.c

src/cs_directsum.o

src/cs_directsumupdate.c

src/cs_directsumupdate.o

src/cs_dmperm.c

src/cs_dmperm.o

src/cs_dmvnorm.c

src/cs_dmvnorm.o

src/cs_droptol.c

src/cs_droptol.o

src/cs_dropzeros.c

src/cs_dropzeros.o

src/cs_dupl.c

src/cs_dupl.o

src/cs_entry.c

src/cs_entry.o

src/cs_ereach.c

src/cs_ereach.o

src/cs_etree.c

src/cs_etree.o

src/cs_fkeep.c

src/cs_fkeep.o

src/cs_gaxpy.c

src/cs_gaxpy.o

src/cs_happly.c

src/cs_happly.o

src/cs_house.c

src/cs_house.o

src/cs_inv.c

src/cs_inv.o

src/cs_invR.c

src/cs_invR.o

src/cs_ipvec.c

src/cs_ipvec.o

src/cs_kroneckerA.c

src/cs_kroneckerA.o

src/cs_kroneckerAupdate.c

src/cs_kroneckerAupdate.o

src/cs_kroneckerDA.c

src/cs_kroneckerDA.o

src/cs_kroneckerDI.c

src/cs_kroneckerDI.o

src/cs_kroneckerI.c

src/cs_kroneckerI.o

src/cs_kroneckerIadd.c

src/cs_kroneckerIadd.o

src/cs_kroneckerIupdate.c

src/cs_kroneckerIupdate.o

src/cs_kroneckerSI.c

src/cs_kroneckerSI.o

src/cs_kroneckerSIupdate.c

src/cs_kroneckerSIupdate.o

src/cs_leaf.c

src/cs_leaf.o

src/cs_load.c

src/cs_load.o

src/cs_lsolve.c

src/cs_lsolve.o

src/cs_ltsolve.c

src/cs_ltsolve.o

src/cs_lu.c

src/cs_lu.o

src/cs_lusol.c

src/cs_lusol.o

src/cs_malloc.c

src/cs_malloc.o

src/cs_maxtrans.c

src/cs_maxtrans.o

src/cs_multiply.c

src/cs_multiply.o

src/cs_norm.c

src/cs_norm.o

src/cs_omega.c

src/cs_omega.o

src/cs_omegaupdate.c

src/cs_omegaupdate.o

src/cs_permute.c

src/cs_permute.o

src/cs_pinv.c

src/cs_pinv.o

src/cs_post.c

src/cs_post.o

src/cs_print.c

src/cs_print.o

src/cs_pvec.c

src/cs_pvec.o

src/cs_qr.c

src/cs_qr.o

src/cs_qrsol.c

src/cs_qrsol.o

src/cs_rAnte.c

src/cs_rAnte.o

src/cs_rCinvwishart.c

src/cs_rCinvwishart.o

src/cs_rR.c

src/cs_rR.o

src/cs_rRsubinvwishart.c

src/cs_rRsubinvwishart.o

src/cs_rSinvwishart.c

src/cs_rSinvwishart.o

src/cs_randperm.c

src/cs_randperm.o

src/cs_reach.c

src/cs_reach.o

src/cs_rinvwishart.c

src/cs_rinvwishart.o

src/cs_rwishart.c

src/cs_rwishart.o

src/cs_scatter.c

src/cs_scatter.o

src/cs_scc.c

src/cs_scc.o

src/cs_schol.c

src/cs_schol.o

src/cs_schur.c

src/cs_schur.o

src/cs_sortdv.c

src/cs_sortdv.o

src/cs_spsolve.c

src/cs_spsolve.o

src/cs_sqr.c

src/cs_sqr.o

src/cs_symperm.c

src/cs_symperm.o

src/cs_tdfs.c

src/cs_tdfs.o

src/cs_transpose.c

src/cs_transpose.o

src/cs_updown.c

src/cs_updown.o

src/cs_usolve.c

src/cs_usolve.o

src/cs_util.c

src/cs_util.o

src/cs_utsolve.c

src/cs_utsolve.o

src/dcmvnormR.cc

src/dcmvnormR.o

src/dcutpoints.c

src/dcutpoints.o

src/inverseA.cc

src/inverseA.o

src/pcmvnorm.c

src/pcmvnorm.o

src/pkk.c

src/pkk.o

src/pkkR.cc

src/rIW.cc

src/rIW.o

src/rante.cc

src/rante.o

src/rbv.cc

src/rbv.o

src/rtcmvnorm.c

src/rtcmvnorm.o

src/rtcmvnormR.cc

src/rtcmvnormR.o

src/rtnorm.c

src/rtnorm.o

src/rtnormR.cc

src/rtnormR.o

vignettes/.Rhistory

vignettes/CourseNotes.Rnw

vignettes/CourseNotes.bib

vignettes/CourseNotes.pdf

vignettes/Figures/CourseNotes.Rnw

vignettes/Figures/Overview.Rnw

vignettes/Figures/TEST.R

vignettes/Figures/Tutorial.Rnw

vignettes/Figures/buildCN.R vignettes/Figures/defaults.R vignettes/Lecture1-006.pdf vignettes/Lecture1-011.pdf vignettes/Lecture1-015.pdf vignettes/Lecture1-023.pdf vignettes/Lecture1-027.pdf vignettes/Lecture1-034.pdf vignettes/Lecture1-041.pdf vignettes/Lecture1-049.pdf vignettes/Lecture1-052.pdf vignettes/Lecture1-055.pdf vignettes/Lecture1-058.pdf vignettes/Lecture1-060.pdf vignettes/Lecture1-065.pdf vignettes/Lecture1-071.pdf vignettes/Lecture1-075.pdf

vignettes/Lecture1.tex

vignettes/Lecture2-007.pdf vignettes/Lecture2-019.pdf vignettes/Lecture2-023.pdf vignettes/Lecture2-029.pdf vignettes/Lecture2-030.pdf vignettes/Lecture2-037.pdf vignettes/Lecture2-038.pdf vignettes/Lecture2-046.pdf vignettes/Lecture2-050.pdf vignettes/Lecture2-052.pdf vignettes/Lecture2-055.pdf vignettes/Lecture2-066.pdf vignettes/Lecture2-068.pdf vignettes/Lecture2-070.pdf vignettes/Lecture2-072.pdf vignettes/Lecture2-074.pdf vignettes/Lecture2-081.pdf vignettes/Lecture2-085.pdf

vignettes/Lecture2.tex

vignettes/Lecture3-005.pdf vignettes/Lecture3-018.pdf vignettes/Lecture3-025.pdf vignettes/Lecture3-028.pdf

vignettes/Lecture3.tex

vignettes/Lecture4-005.pdf vignettes/Lecture4-011.pdf vignettes/Lecture4-014.pdf vignettes/Lecture4-017.pdf vignettes/Lecture4-022.pdf vignettes/Lecture4-026.pdf vignettes/Lecture4-030.pdf vignettes/Lecture4-034.pdf vignettes/Lecture4-037.pdf vignettes/Lecture4-040.pdf

vignettes/Lecture4.tex

vignettes/Lecture5-011.pdf vignettes/Lecture5-016.pdf vignettes/Lecture5-024.pdf vignettes/Lecture5-029.pdf vignettes/Lecture5-039.pdf vignettes/Lecture5-043.pdf vignettes/Lecture5-046.pdf

vignettes/Lecture5.tex

vignettes/Lecture6-006.pdf

vignettes/Lecture6.tex

vignettes/Lecture7.tex

vignettes/Lecture8-005.pdf vignettes/Lecture8-012.pdf vignettes/Lecture8-015.pdf vignettes/Lecture8-018.pdf vignettes/Lecture8-021.pdf vignettes/Lecture8-023.pdf

vignettes/Lecture8.tex

vignettes/Lecture9.tex

vignettes/Overview-Sol.pdf vignettes/Overview-VCV.pdf

vignettes/Overview.Rnw

vignettes/Overview.bib

vignettes/Overview.pdf vignettes/axes.pdf vignettes/rgl1.pdf vignettes/rgl2.pdf

jarrodhadfield/MCMCglmm documentation built on Dec. 23, 2024, 8:48 a.m.

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jarrodhadfield/MCMCglmm
MCMC Generalised Linear Mixed Models

Files in jarrodhadfield/MCMCglmm
MCMC Generalised Linear Mixed Models

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jarrodhadfield/MCMCglmm MCMC Generalised Linear Mixed Models

Files in jarrodhadfield/MCMCglmm MCMC Generalised Linear Mixed Models

R Package Documentation

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jarrodhadfield/MCMCglmm
MCMC Generalised Linear Mixed Models

Files in jarrodhadfield/MCMCglmm
MCMC Generalised Linear Mixed Models