Man pages for jdavilal/excerno
Fillter out somatic mutations generated by the Formalin-Fixed Paraffin-Embedded (FFPE) tissue preservation technique from cancer tissue
| classify_simulated_samples | Get classification of each mutation |
| create_gr_from_sample | Create GRange object from sample data frame |
| create_signature_sample_vector | Create signature sample vector |
| excerno_vcf | Exercerno VCF |
| extract_all_prob | Extract probabilities using bayes' thereom |
| find_signature_name | Find signature name |
| format_mutation | Format mutation |
| get_classification | Get classification using Bayes' Thereom |
| get_ffpe_signature | Get our FFPE signature |
| get_mutational_vector | Get mutational vector |
| get_mutation_types | Get mutation types |
| signature_cosine_similarity | Signature cosine similarity |
| write_classification_to_vcf | Write classification data frame to VCF file |
| write_grange_to_vcf | Write a GRange to a vcf file |
