Man pages for jdstorey/edge
Extraction of Differential Gene Expression
| apply_jackstraw | Non-Parametric Jackstraw for Principal Component Analysis... |
| apply_qvalue | Estimate the q-values for a given set of p-values |
| apply_snm | Supervised normalization of data in edge |
| apply_sva | Estimate surrogate variables |
| betaCoef | Regression coefficients from full model fit |
| build_models | Generate a deSet object with full and null models |
| build_study | Formulates the experimental models |
| deFit-class | The differential expression class for the model fits |
| deSet | Create a deSet object from an ExpressionSet |
| deSet-class | The differential expression class (deSet) |
| edge | Extraction of Differential Gene Expression |
| endotoxin | Gene expression dataset from Calvano et al. (2005) Nature |
| fitFull | Fitted data from the full model |
| fit_models | Linear regression of the null and full models |
| fitNull | Fitted data from the null model |
| fullMatrix | Matrix representation of full model |
| fullModel | Full model equation |
| gibson | Gene expression dataset from Idaghdour et al. (2008) |
| individual | Individuals sampled in experiment |
| kidney | Gene expression dataset from Rodwell et al. (2004) |
| kl_clust | Modular optimal discovery procedure (mODP) |
| lrt | Performs F-test (likelihood ratio test using Normal... |
| nullMatrix | Matrix representation of null model |
| nullModel | Null model equation from deSet object |
| odp | The optimal discovery procedure |
| qvalueObj | Access/set qvalue slot |
| resFull | Residuals of full model fit |
| resNull | Residuals of null model fit |
| show | Show function for deFit and deSet |
| sType | Statistic type used in analysis |
| summary | Summary of deFit and deSet |
