Files in jendelman/polyBreedR
Genomics-assisted breeding for polyploids (and diploids)
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/ADsplit.R
R/A_mat.R
R/GT2DS.R
R/G_mat.R
R/GvsA.R
R/array2vcf.R
R/check_ploidy.R
R/check_trio.R
R/dart2vcf.R
R/direct_sum.R
R/gbs.R
R/geno_call.R
R/get_pedigree.R
R/impute.R
R/impute_L2H.R
R/impute_LA.R
R/madc.R
R/merge_impute.R
R/predict_NMM.R
R/private_functions.R
R/readXY.R
R/sysdata.rda
R/trim_ped.R
R/update_alias.R
R/vcf2csv.R
R/vcf_functions.R
R/write_vcf.R
README.Rmd
README.md
docs/polyBreedR_Manual.pdf
docs/polyBreedR_Vignette1.html
docs/polyBreedR_Vignette2.html
docs/polyBreedR_Vignette3.html
inst/CITATION
inst/vignette_data/DArTag_Allele_Dose_Report.csv
inst/vignette_data/DArTag_Allele_match_counts_collapsed.csv
inst/vignette_data/diallel_DArTag.vcf.gz
inst/vignette_data/diallel_array.vcf.gz
inst/vignette_data/diallel_pedigree.csv
inst/vignette_data/diallel_phased_parents.csv
inst/vignette_data/potato_V1array_geno.csv
inst/vignette_data/potato_V3array_XYdata.txt
inst/vignette_data/potato_V3array_map.csv
inst/vignette_data/potato_V3array_model.csv
inst/vignette_data/potato_V4array.vcf
inst/vignette_data/potato_V4array_map.csv
inst/vignette_data/potato_V4array_model.csv
inst/vignette_data/potato_dihaploids.csv.gz
inst/vignette_data/potato_pedigree.csv
man/ADsplit.Rd
man/A_mat.Rd
man/GT2DS.Rd
man/G_mat.Rd
man/GvsA.Rd
man/array2vcf.Rd
man/check_ploidy.Rd
man/check_trio.Rd
man/dart2vcf.Rd
man/direct_sum.Rd
man/gbs.Rd
man/geno_call.Rd
man/get_pedigree.Rd
man/impute.Rd
man/impute_L2H.Rd
man/impute_LA.Rd
man/madc.Rd
man/merge_impute.Rd
man/predict_NMM.Rd
man/readXY.Rd
man/trim_ped.Rd
man/update_alias.Rd
man/vcf2csv.Rd
man/write_vcf.Rd
vignettes/Vignette1.Rmd
vignettes/Vignette2.Rmd
vignettes/Vignette3.Rmd
