Man pages for jgockley62/UW_RNASeq
Identify differentially expressed genes counts data
| biomart_obj | Get available Ensembl dataset |
| boxplot_vars | Explore metadata by variable. |
| clean_covariates | Create covariate matrix from tidy metadata data frame. |
| coerce_continuous | Coerce objects to type numeric. |
| coerce_factors | Coerce objects to type factors. |
| collapse_duplicate_hgnc_symbol | Duplicate HGNC |
| convert_geneids | Get gene Ids |
| cqn | Conditional Quantile Normalization (CQN) |
| filter_genes | Filter genes |
| get_biomart | Get Ensembl biomaRt object |
| get_data | Detect file type and download data |
| parse_counts | Subset counts data frame |
| reexports | Objects exported from other packages |
| rnaseq_plan | Execute the drake RNA-seq plan |
