Files in jhrcook/HotNetvieweR
Read HotNet2 Results and Convert to Graph object
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
HotNetvieweR.Rproj
LICENSE.md
NAMESPACE
R/TEMP_original_fxns.R
R/conforms_to_delta_fileorg.R
R/get_best_delta.R
R/get_hn2_subnetworks.R
R/get_k_for_delta.R
README.Rmd
README.md
_pkgdown.yml
appveyor.yml
codecov.yml
docs/404.html
docs/LICENSE-text.html
docs/LICENSE.html
docs/articles/HotNet2-setup-and-example.html
docs/articles/index.html
docs/articles/standard-use.html
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/conforms_to_delta_fileorg.html
docs/reference/get_best_delta.html
docs/reference/get_hn2_subnetworks.html
docs/reference/get_k_for_delta.html
docs/reference/index.html
inst/WORDLIST
inst/extdata/output_consensus/consensus/stats.tsv
inst/extdata/output_consensus/consensus/subnetworks.json
inst/extdata/output_consensus/consensus/subnetworks.tsv
inst/extdata/output_consensus/consensus/viz-data.json
inst/extdata/output_consensus/network1-mutationsheat/delta_0.007907676044851542/components.txt
inst/extdata/output_consensus/network1-mutationsheat/delta_0.007907676044851542/results.json
inst/extdata/output_consensus/network1-mutationsheat/delta_0.007907676044851542/significance.txt
inst/extdata/output_consensus/network1-mutationsheat/delta_1.024861412588507e-05/components.txt
inst/extdata/output_consensus/network1-mutationsheat/delta_1.024861412588507e-05/results.json
inst/extdata/output_consensus/network1-mutationsheat/delta_1.024861412588507e-05/significance.txt
inst/extdata/output_consensus/network1-mutationsheat/viz-data.json
inst/extdata/output_consensus/network1-scoresheat/delta_0.03640584065578878/components.txt
inst/extdata/output_consensus/network1-scoresheat/delta_0.03640584065578878/results.json
inst/extdata/output_consensus/network1-scoresheat/delta_0.03640584065578878/significance.txt
inst/extdata/output_consensus/network1-scoresheat/delta_0.04944752808660269/components.txt
inst/extdata/output_consensus/network1-scoresheat/delta_0.04944752808660269/results.json
inst/extdata/output_consensus/network1-scoresheat/delta_0.04944752808660269/significance.txt
inst/extdata/output_consensus/network1-scoresheat/delta_0.052240293473005295/components.txt
inst/extdata/output_consensus/network1-scoresheat/delta_0.052240293473005295/results.json
inst/extdata/output_consensus/network1-scoresheat/delta_0.052240293473005295/significance.txt
inst/extdata/output_consensus/network1-scoresheat/delta_0.10117589682340622/components.txt
inst/extdata/output_consensus/network1-scoresheat/delta_0.10117589682340622/results.json
inst/extdata/output_consensus/network1-scoresheat/delta_0.10117589682340622/significance.txt
inst/extdata/output_consensus/network1-scoresheat/viz-data.json
inst/extdata/output_consensus/network2-mutationsheat/delta_0.005027415044605733/components.txt
inst/extdata/output_consensus/network2-mutationsheat/delta_0.005027415044605733/results.json
inst/extdata/output_consensus/network2-mutationsheat/delta_0.005027415044605733/significance.txt
inst/extdata/output_consensus/network2-mutationsheat/delta_5.711058292945381e-06/components.txt
inst/extdata/output_consensus/network2-mutationsheat/delta_5.711058292945381e-06/results.json
inst/extdata/output_consensus/network2-mutationsheat/delta_5.711058292945381e-06/significance.txt
inst/extdata/output_consensus/network2-mutationsheat/viz-data.json
inst/extdata/output_consensus/network2-scoresheat/delta_0.051236389204859734/components.txt
inst/extdata/output_consensus/network2-scoresheat/delta_0.051236389204859734/results.json
inst/extdata/output_consensus/network2-scoresheat/delta_0.051236389204859734/significance.txt
inst/extdata/output_consensus/network2-scoresheat/delta_0.05293082073330879/components.txt
inst/extdata/output_consensus/network2-scoresheat/delta_0.05293082073330879/results.json
inst/extdata/output_consensus/network2-scoresheat/delta_0.05293082073330879/significance.txt
inst/extdata/output_consensus/network2-scoresheat/delta_0.05503008887171745/components.txt
inst/extdata/output_consensus/network2-scoresheat/delta_0.05503008887171745/results.json
inst/extdata/output_consensus/network2-scoresheat/delta_0.05503008887171745/significance.txt
inst/extdata/output_consensus/network2-scoresheat/delta_0.10069134272634983/components.txt
inst/extdata/output_consensus/network2-scoresheat/delta_0.10069134272634983/results.json
inst/extdata/output_consensus/network2-scoresheat/delta_0.10069134272634983/significance.txt
inst/extdata/output_consensus/network2-scoresheat/viz-data.json
inst/extdata/output_simple/consensus/stats.tsv
inst/extdata/output_simple/consensus/subnetworks.json
inst/extdata/output_simple/consensus/subnetworks.tsv
inst/extdata/output_simple/consensus/viz-data.json
inst/extdata/output_simple/network1-mutationsheat/delta_0.007907676044851542/components.txt
inst/extdata/output_simple/network1-mutationsheat/delta_0.007907676044851542/results.json
inst/extdata/output_simple/network1-mutationsheat/delta_0.007907676044851542/significance.txt
inst/extdata/output_simple/network1-mutationsheat/delta_1.024861412588507e-05/components.txt
inst/extdata/output_simple/network1-mutationsheat/delta_1.024861412588507e-05/results.json
inst/extdata/output_simple/network1-mutationsheat/delta_1.024861412588507e-05/significance.txt
inst/extdata/output_simple/network1-mutationsheat/viz-data.json
man/conforms_to_delta_fileorg.Rd
man/get_best_delta.Rd
man/get_hn2_subnetworks.Rd
man/get_k_for_delta.Rd
tests/spelling.R
tests/testthat.R
tests/testthat/test-get_hn2_subnetworks.R
vignettes/.gitignore
vignettes/HotNet2-setup-and-example.Rmd
vignettes/standard-use.Rmd
