Man pages for jianhong/enhancerHomologSearch
Identification of putative mammalian orthologs to given enhancer
| alignment | Output |
| alignmentOne | Get alignment scores |
| conservedMotifs | check the conserved motifs in the orthologs |
| Enhancers-class | Class '"Enhancers"' |
| getENCODEdata | Download enhancer sequences from ENCODE |
| motifs | Pre-clustered motifs from human and mouse |
| queryEncode | query data from ENCODE by predefined criteria |
| saveAlignments | output alignments |
| searchTFBPS | Transcription Factor Binding Pattern Similarity (TFBPS)... |
| shuffle | shuffle reads |
