jianhong/interactionHub: A R/Bioconductor package to detect the interaction nodes from HiC/HiChIP/HiCAR data

The GenomicInteractionNodes package can import interactions from bedpe file and define the interaction nodes, the genomic interaction sites with multiple interaction loops. The interaction nodes is a binding platform regulates one or multiple genes. The detected interaction nodes will be annotated for downstream validation.

Getting started

Package details

Bioconductor views HiC Sequencing Software
Maintainer
Licensefile LICENSE
Version0.99.7
URL https://github.com/jianhong/GenomicInteractionNodes
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("jianhong/interactionHub")
jianhong/interactionHub documentation built on April 22, 2022, 12:34 p.m.