TreeExp is an R package developed to provides useful phylogenetic tools applicable to RNA-seq data. The package can be applied to comparative expression evolution analysis, which includes but not liminited to: (i) pairwise expression distance estimation; (ii) relative rate test for transcriptome evolution; (iii) the strength of expression conservation estimation; (iv) ancestral transcriptome inference. Statistical methods implemented in the package was based on Ornstein-Uhlenbeck (OU) model of transcriptome evolution which claims that expression changes are constrained by stabilizing selection.
Package details |
|
---|---|
Bioconductor views | Software Transcriptomics |
Maintainer | |
License | GPL (>=3) |
Version | 0.99.3 |
Package repository | View on GitHub |
Installation |
Install the latest version of this package by entering the following in R:
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.