Files in jjsayleraxio/JTIMLmaster
An application of ML methods
.Rbuildignore
.gitignore
DESCRIPTION
JTIMLmaster.Rproj
LICENSE
NAMESPACE
R/GBM_boot_err_Func.R
R/ML_error_function.R
R/Marine_pheno.R
R/Marine_raw.R
R/NN_boot_err_Func.R
R/PR_boot_err_Func.R
R/RF_boot_err_Func.R
R/SVM_boot_err_Func.R
R/WTC_pheno.R
R/WTC_raw.R
R/diabetes-data.R
README.md
build/vignette.rds
data/Marine_pheno.rda
data/Marine_raw.rda
data/WTC_pheno.rda
data/WTC_raw.rda
data/datalist
data/diabetes_data.rda
inst/doc/Diabetes_data.R
inst/doc/Diabetes_data.Rmd
inst/doc/Diabetes_data.html
inst/doc/JTIMLmaster-vignette.R
inst/doc/JTIMLmaster-vignette.Rmd
inst/doc/JTIMLmaster-vignette.html
inst/doc/Visualization.R
inst/doc/Visualization.Rmd
inst/doc/Visualization.html
man/GBM.boot.err.Func.Rd
man/ML_error.Rd
man/Marine_pheno.Rd
man/Marine_raw.Rd
man/NN.boot.err.Func.Rd
man/PR.boot.err.Func.Rd
man/RF.boot.err.Func.Rd
man/SVM.boot.err.Func.Rd
man/WTC_pheno.Rd
man/WTC_raw.Rd
man/diabetes_data.Rd
vignettes/Diabetes_data.Rmd
vignettes/Figs/Data QC-1.png
vignettes/Figs/Data QC-2.png
vignettes/Figs/Data QC-3.png
vignettes/Figs/Data QC-4.png
vignettes/Figs/Data QC-5.png
vignettes/Figs/Data QC-6.png
vignettes/Figs/Facet-1.png
vignettes/Figs/Facet-2.png
vignettes/Figs/Facet-3.png
vignettes/Figs/Facet-4.png
vignettes/Figs/Feature Selection by DE analysis-1.png
vignettes/Figs/Gredient Boosting result summary-1.png
vignettes/Figs/Neural Network result summary-1.png
vignettes/Figs/Only Post case-1.png
vignettes/Figs/Only Post case-2.png
vignettes/Figs/PCA and MDS for Marine-1.png
vignettes/Figs/PCA and MDS for Marine-2.png
vignettes/Figs/PCA and MDS-1.png
vignettes/Figs/PCA and MDS-2.png
vignettes/Figs/PR result-1.png
vignettes/Figs/Polygenic Score for Marine data by fitting WTC result-1.png
vignettes/Figs/Polygenic Score for Marine data by fitting WTC result-2.png
vignettes/Figs/Post Deployment data-1.png
vignettes/Figs/Post Deplyment dat-1.png
vignettes/Figs/Preprocessing the Marine data-1.png
vignettes/Figs/RF result summary-1.png
vignettes/Figs/Random Forest model fitting-1.png
vignettes/Figs/SVM result summary-1.png
vignettes/Figs/Smoothing-1.png
vignettes/Figs/Smoothing-2.png
vignettes/Figs/Smoothing-3.png
vignettes/Figs/Vocano Plots-1.png
vignettes/Figs/Vocano Plots-2.png
vignettes/Figs/Vocano Plots-3.png
vignettes/Figs/boxplot-1.png
vignettes/Figs/boxplot-2.png
vignettes/Figs/boxplot-3.png
vignettes/Figs/boxplot-4.png
vignettes/Figs/boxplot-5.png
vignettes/Figs/boxplot-6.png
vignettes/Figs/displ vs hwy-1.png
vignettes/Figs/displ vs hwy-2.png
vignettes/Figs/displ vs hwy-3.png
vignettes/Figs/displ vs hwy-4.png
vignettes/Figs/displ vs hwy-5.png
vignettes/Figs/displ vs hwy-6.png
vignettes/Figs/heatmap-1.png
vignettes/Figs/heatmap-2.png
vignettes/Figs/logistic model fitting-1.png
vignettes/Figs/logistic model fitting-2.png
vignettes/Figs/simple bar plot-1.png
vignettes/Figs/simple bar plot-10.png
vignettes/Figs/simple bar plot-11.png
vignettes/Figs/simple bar plot-2.png
vignettes/Figs/simple bar plot-3.png
vignettes/Figs/simple bar plot-4.png
vignettes/Figs/simple bar plot-5.png
vignettes/Figs/simple bar plot-6.png
vignettes/Figs/simple bar plot-7.png
vignettes/Figs/simple bar plot-8.png
vignettes/Figs/simple bar plot-9.png
vignettes/Figs/summary of geom_smooth-1.png
vignettes/Figs/summary of geom_smooth-2.png
vignettes/Figs/summary of geom_smooth-3.png
vignettes/Figs/summary of geom_smooth-4.png
vignettes/Figs/summary of geom_smooth-5.png
vignettes/Figs/summary of geom_smooth-6.png
vignettes/Figs/voom adjustment-1.png
vignettes/Figs/voom adjustment-2.png
vignettes/JTIMLmaster-vignette.Rmd
vignettes/Visualization.Rmd
