Files in jmzobitz/CanadaFire
Compute Soil Respiration Fluxes from a Canadian Fire Chronosequence
.Rbuildignore
.gitignore
DESCRIPTION
FireResp.Rproj
LICENSE
LICENSE.md
NAMESPACE
R/combined_data.R
R/combined_params.R
R/compute_aic.R
R/compute_model_respiration.R
R/compute_model_respiration_components.R
R/estimate_data.R
R/hello.R
R/model_expressions.R
R/nlxb_jz.R
R/parameter_estimate.R
R/respiration_expressions.R
R/rss_filter.R
R/summarize_flux_component_approach.R
R/summarize_median_parameters.R
R/summarize_median_soil_respiration.R
R/taylor_compute.R
R/taylor_plot.R
R/theme_canada.R
R/utils-pipe.R
data-process/01-process-fire-data.R
data-process/02-parameter-prepare.R
data-process/03.1-incubation-data-prepare.R
data-process/03.2-incubation-proportion-compute.R
data-process/03.3-incubation-CA-stats.R
data-process/04-field-data-prepare.R
data-process/05-model-data-prepare.R
data-process/06-model-expression-prepare.R
data-process/07-estimate-prepare.R
data-process/data-outputs/fire_1968.Rda
data-process/data-outputs/fire_1990.Rda
data-process/data-outputs/fire_2012.Rda
data-process/data-outputs/incubation-CA-stats.Rda
data-process/data-outputs/incubation-soil-data.Rda
data-process/data-outputs/incubation-soil-proportion-year.Rda
data-process/data-outputs/soil-field-data.Rda
data-process/data-outputs/study-sites.Rda
data-raw/Canada C kg m2.xlsx
data-raw/Canada data 2015.xlsx
data-raw/MicrobeData_Canada.xlsx
data-raw/Modeling data Canada North.xlsx
data-raw/SRDB_V5_1827/comp/SRDB_V5.pdf
data-raw/SRDB_V5_1827/comp/SRDBv5.R
data-raw/SRDB_V5_1827/comp/calculations_worksheets_v5.zip
data-raw/SRDB_V5_1827/comp/srdb-data_fields_V5.txt
data-raw/SRDB_V5_1827/comp/srdb-equations_fields_V5.txt
data-raw/SRDB_V5_1827/comp/srdb-studies_fields_V5.txt
data-raw/SRDB_V5_1827/data/srdb-data-V5.csv
data-raw/SRDB_V5_1827/data/srdb-equations-V5.csv
data-raw/SRDB_V5_1827/data/srdb-studies-V5.csv
data-raw/SRDB_V5_1827/guide/Online_Version_SRDB_V5.html
data-raw/appears_data.csv
data-raw/incubation-model-param.xlsx
data-raw/riberio-kumera.xlsx
data/combined_data.rda
data/combined_params.rda
data/estimate_data.rda
data/model_expressions.rda
data/respiration_expressions.rda
estimate-results/field-approach-results.Rda
estimate-results/field-linear-approach-results.Rda
estimate-results/incubation-field-approach-results.Rda
estimate-results/incubation-field-linear-approach-results.Rda
estimate-results/incubation-linear-approach-data.Rda
estimate-results/incubation-only-results.Rda
estimate-results/stats-results/median-flux-components.Rda
estimate-results/stats-results/median-params-field.Rda
estimate-results/stats-results/median-params-incubation.Rda
estimate-results/stats-results/sparkline-aic-data.Rda
estimate-results/stats-results/sparkline-parameter-data.Rda
estimate-results/stats-results/summary-parameter-incubation.Rda
estimate-results/stats-results/taylor-field.Rda
estimate-results/stats-results/taylor-incubation.Rda
figures-process/01.1-maps-plot.R
figures-process/01.2-summary-table.R
figures-process/02-soil-proportion-plot.R
figures-process/03-incubation-taylor-plot.R
figures-process/04-field-taylor-plot.R
figures-process/05-parameter-sparkline-plot.R
figures-process/06-aic-r2-plot.R
figures-process/07-flux-results-plot.R
figures-process/08-ra-ratio-plot.R
man/combined_data.Rd
man/combined_params.Rd
man/compute_aic.Rd
man/compute_model_respiration.Rd
man/compute_model_respiration_components.Rd
man/estimate_data.Rd
man/hello.Rd
man/model_expressions.Rd
man/nlxb_jz.Rd
man/parameter_estimate.Rd
man/pipe.Rd
man/respiration_expressions.Rd
man/rss_filter.Rd
man/summarize_flux_component_approach.Rd
man/summarize_median_parameters.Rd
man/summarize_median_soil_respiration.Rd
man/taylor_compute.Rd
man/taylor_plot.Rd
man/theme_canada.Rd
manuscript-figures/01-a-base-map.png
manuscript-figures/01-b-north-sites.png
manuscript-figures/01-c-south-sites.png
manuscript-figures/02-soil-proportion-fit.png
manuscript-figures/03-incubation-taylor.png
manuscript-figures/04-field-taylor.png
manuscript-figures/05-parameter-sparkline-table.png
manuscript-figures/06-aic-sparkline-table.png
manuscript-figures/07-flux-results-model.png
manuscript-figures/08-ratio-results-model.png
manuscript-figures/S02.1.parameter-sparkline-table.field.d5.png
manuscript-figures/S02.2.parameter-sparkline-table.field.d10.png
manuscript-figures/S02.3.parameter-sparkline-table.field.dall.png
manuscript-figures/S03.1.parameter-sparkline-table.field.linear.d5.png
manuscript-figures/S03.2.parameter-sparkline-table.field.linear.d10.png
manuscript-figures/S03.3.parameter-sparkline-table.field.linear.dall.png
manuscript-figures/S04.1.parameter-sparkline-table.incubation.field.d5.png
manuscript-figures/S04.2.parameter-sparkline-table.incubation.field.d10.png
manuscript-figures/S04.3.parameter-sparkline-table.incubation.field.dall.png
manuscript-figures/S05.1.parameter-sparkline-table.incubation.field.linear.d5.png
manuscript-figures/S05.2.parameter-sparkline-table.incubation.field.linear.d10.png
manuscript-figures/S05.3.parameter-sparkline-table.incubation.field.linear.dall.png
manuscript-figures/summary_soil_table.Rda
manuscript-figures/summary_soil_table.png
manuscript-figures/summary_soil_table.tex
manuscript-process.R
model-process/01.1-incubation-only-estimate.R
model-process/01.2-incubation-linear-process.R
model-process/02.1-field-approach-estimate.R
model-process/02.2-field-linear-approach-estimate.R
model-process/02.3-incubation-field-approach-estimate.R
model-process/02.4-incubation-field-linear-approach-estimate.R
model-process/03.0-params-process.R
model-process/03.1-flux-components-process.R
model-process/03.2-incubation-only-stats-process.R
model-process/03.3-field-stats-process.R
