API for joannawolthuis/MetaboShiny
Interactive Direct Infusion Metabolomics Analysis and Annotation
| Global functions | |
|---|---|
| abstracts2wordcloud | Source code |
| allMZ | Source code |
| allSampInMeta | Source code |
| allSampInPeaktable | Source code |
| app.font.css | Source code |
| asMetaboAnalyst | Source code |
| batchCorrQC | Source code |
| batchCorr_mSet | Source code |
| blackwhite.colors | Source code |
| browse_db | Source code |
| build.enrich.KEGG | Source code |
| calcHeatMap | Source code |
| change.mSet | Source code |
| cleanCSV | Source code |
| combatCSV | Source code |
| escape | Source code |
| expand.grid.unique | Source code |
| factorize | Source code |
| fadeImageButton | Source code |
| filterPatDB | Source code |
| flattenlist | Source code |
| footer.css | Source code |
| get.col.map | Source code |
| getAbstracts | Source code |
| getCSVquery | Source code |
| getColDistribution | Source code |
| getDefaultCondition | Source code |
| getFilteredWordFreqency | Source code |
| getMLperformance | Source code |
| getMissing | Source code |
| getMultiMLperformance | Source code |
| getOptions | Source code |
| getProfile | Source code |
| getSampInt | Source code |
| getSampMeta | Source code |
| getTopHits | Source code |
| getWordFrequency | Source code |
| get_exp_vars | Source code |
| get_os | Source code |
| get_prematched_mz | Source code |
| get_prematches | Source code |
| ggPlotAOV | Source code |
| ggPlotASCA | Source code |
| ggPlotBar | Source code |
| ggPlotClass | Source code |
| ggPlotCombi | Source code |
| ggPlotCurves | Source code |
| ggPlotFC | Source code |
| ggPlotMLMistakes | Source code |
| ggPlotMeba | Source code |
| ggPlotMummi | Source code |
| ggPlotPattern | Source code |
| ggPlotPerm | Source code |
| ggPlotPower | Source code |
| ggPlotScree | Source code |
| ggPlotTT | Source code |
| ggPlotVenn | Source code |
| ggPlotVolc | Source code |
| ggPlotWordBar | Source code |
| ggplotMebaSingle | Source code |
| ggplotNormSummary | Source code |
| ggplotSampleNormSummary | Source code |
| ggplotSummary | Source code |
| hideQC | Source code |
| import.pat.csvs | Source code |
| internetWorks | Source code |
| is.ordered.mSet | Source code |
| joanna_debugger | Source code |
| load.mSet | Source code |
| loadModal | Source code |
| mape | Source code |
| metshiAlert | Source code |
| metshiRevSearch | Source code |
| metshiTable | Source code |
| ml_prep_data | Source code |
| ml_run | Source code |
| modifyStyle | Source code |
| mzLeftPostFilt | Source code |
| name.mSet | Source code |
| nav.bar.css | Source code |
| p2stars | Source code |
| pair.mSet | Source code |
| pcaCorr | Source code |
| plotPCA.2d | Source code |
| plotPCA.3d | Source code |
| plotPCAloadings.2d | Source code |
| plotPCAloadings.3d | Source code |
| plot_mol | Source code |
| ppm_range | Source code |
| prepDatabase | Source code |
| reformat.metadata | Source code |
| removeOutliers | Source code |
| removeUnusedQC | Source code |
| replRF | Source code |
| replRowMin | Source code |
| reset.mSet | Source code |
| runML | Source code |
| sardine | Source code |
| score.add | Source code |
| score.isos | Source code |
| set.col.map | Source code |
| setHeartLoader | Source code |
| setOption | Source code |
| start_metshi | Source code |
| store.mSet | Source code |
| subset_mSet | Source code |
| subset_mSet_mz | Source code |
| switchButton | Source code |
| tooEmptySamps | Source code |
