Man pages for joeburns06/hocuspocus
A Suite of Single-Cell RNA-Seq Analysis Tools Built for Dummy Biologists
| blotPlot | Generate violin plots with a high density fit (i.e. blot... |
| cData | Display information in the colorData slot |
| clusterCells | Perform clustering analysis on the samples in the expression... |
| clusterGenes | Perform clustering analysis on the genes in the expression... |
| colorData | Display information in the colorData slot |
| gapStats | Unbiased estimate of the number of cell or gene clusters... |
| heatMap | Generate a heatmap from the matrix of expression values. |
| Hocus-class | The Hocus class |
| logData | Display information in the logData slot |
| pca1D | Generate a one-dimensional PCA plot. |
| pca2D | Generate a two-dimensional PCA plot. |
| pcaMatrix | Generate a series of plots comparing the first 10 PCs of a... |
| prepCells | Prepare matrix of expression values for downstream analyses |
| readCells | Load all experiment data into R |
| reduceGenes_pca | Reduce number of genes in expression matrix using principal... |
| reduceGenes_var | Reduce number of genes in expression matrix based on variance |
| setColors | Add colors to colorData slot |
| subGroups | Select a subset of groups in phenoData |
