Files in jokergoo/EnrichedHeatmap
Making Enriched Heatmaps
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/EnrichedHeatmap.R
R/EnrichedHeatmapList.R
R/Rcpp_interface.R
R/normalize.R
R/utils.R
R/zzz.R
README.md
_pkgdown.yml
build_pkg_site.R
docs/404.html
docs/LICENSE-text.html
docs/articles/EnrichedHeatmap.html
docs/articles/EnrichedHeatmap_files/figure-html/extension-1.png
docs/articles/EnrichedHeatmap_files/figure-html/extension-2.png
docs/articles/EnrichedHeatmap_files/figure-html/smooth-1.png
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docs/articles/EnrichedHeatmap_intro.html
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docs/articles/EnrichedHeatmap_intro_files/figure-html/unnamed-chunk-8-1.png
docs/articles/custom.css
docs/articles/image/categorical_clustered-1.png
docs/articles/image/categorical_default-1.png
docs/articles/image/categorical_gene_body-1.png
docs/articles/image/categorical_kmeans-1.png
docs/articles/image/categorical_partial_kmeans-1.png
docs/articles/image/categorical_with_lung-1.png
docs/articles/image/categorical_with_meth-1.png
docs/articles/image/tssbiv_chord_diagram-1.png
docs/articles/image/unnamed-chunk-10-1.png
docs/articles/index.html
docs/articles/roadmap.gif
docs/articles/roadmap.html
docs/articles/roadmap_files/figure-html/unnamed-chunk-27-1.png
docs/articles/roadmap_files/figure-html/unnamed-chunk-28-1.png
docs/articles/roadmap_files/figure-html/unnamed-chunk-29-1.png
docs/articles/row_odering.html
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docs/articles/row_ordering.html
docs/articles/row_ordering_files/figure-html/unnamed-chunk-4-1.png
docs/articles/visualize_categorical_signals.html
docs/articles/visualize_categorical_signals_wrapper.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/EnrichedHeatmap-1.png
docs/reference/EnrichedHeatmap-2.png
docs/reference/EnrichedHeatmap.html
docs/reference/EnrichedHeatmap.rd
docs/reference/Extract.normalizedMatrix.html
docs/reference/Extract.normalizedMatrix.rd
docs/reference/Rplot001.png
docs/reference/Rplot002.png
docs/reference/anno_enriched-1.png
docs/reference/anno_enriched.html
docs/reference/anno_enriched.rd
docs/reference/as.normalizedMatrix.html
docs/reference/as.normalizedMatrix.rd
docs/reference/copyAttr.html
docs/reference/copyAttr.rd
docs/reference/default_smooth_fun.html
docs/reference/default_smooth_fun.rd
docs/reference/discretize.html
docs/reference/discretize.rd
docs/reference/dist_by_closeness.html
docs/reference/dist_by_closeness.rd
docs/reference/enriched_score.html
docs/reference/enriched_score.rd
docs/reference/extract_anno_enriched.html
docs/reference/extract_anno_enriched.rd
docs/reference/failed_rows.html
docs/reference/failed_rows.rd
docs/reference/getSignalsFromList.html
docs/reference/getSignalsFromList.rd
docs/reference/index.html
docs/reference/makeWindows.html
docs/reference/makeWindows.rd
docs/reference/normalizeToMatrix.html
docs/reference/normalizeToMatrix.rd
docs/reference/print.normalizedMatrix.html
docs/reference/print.normalizedMatrix.rd
docs/reference/rbind.normalizedMatrix.html
docs/reference/rbind.normalizedMatrix.rd
docs/sitemap.xml
inst/CITATION
inst/extdata/H3K4me1_corr_normalize_to_tss.RData
inst/extdata/chr21_chromatin_states.RData
inst/extdata/chr21_test_data.RData
inst/extdata/neg_cr.RData
inst/extdata/neg_cr_order_by_dist_closeness.RData
man/EnrichedHeatmap.rd
man/Extract.normalizedMatrix.rd
man/anno_enriched.rd
man/as.normalizedMatrix.rd
man/copyAttr.rd
man/default_smooth_fun.rd
man/discretize.rd
man/dist_by_closeness.rd
man/enriched_score.rd
man/extract_anno_enriched.rd
man/failed_rows.rd
man/getSignalsFromList.rd
man/makeWindows.rd
man/normalizeToMatrix.rd
man/print.normalizedMatrix.rd
man/rbind.normalizedMatrix.rd
src/EnrichedHeatmap.dylib
src/RcppExports.cpp
src/dist_by_closeness.cpp
test/test.R
tests/test-all.R
tests/testthat/test-makeWindows.R
tests/testthat/test-normalizeToMatrix.R
vignettes/EnrichedHeatmap.Rmd
vignettes/EnrichedHeatmap_intro.Rmd
vignettes/custom.css
vignettes/image/categorical_clustered-1.png
vignettes/image/categorical_default-1.png
vignettes/image/categorical_gene_body-1.png
vignettes/image/categorical_kmeans-1.png
vignettes/image/categorical_partial_kmeans-1.png
vignettes/image/categorical_with_lung-1.png
vignettes/image/categorical_with_meth-1.png
vignettes/image/tssbiv_chord_diagram-1.png
vignettes/image/unnamed-chunk-10-1.png
vignettes/roadmap.Rmd
vignettes/roadmap.gif
vignettes/row_ordering.Rmd
vignettes/visualize_categorical_signals.Rmd
