Files in jonclayden/RNiftyReg
Image Registration Using the 'NiftyReg' Library

.Rbuildignore

.covrignore

.github/workflows/ci.yaml

.gitignore

DESCRIPTION

NAMESPACE

NEWS

R/affine.R R/image.R R/nifti.R R/niftyreg.R R/transform.R R/zzz.R README.Rmd README.md

cleanup

configure

configure.ac

inst/extdata/affine.txt

inst/extdata/control.nii.gz

inst/extdata/epi_t2.nii.gz

inst/extdata/flash_t1.nii.gz

inst/extdata/house.png

inst/extdata/house_colour.png

inst/extdata/house_colour_large.jpg

inst/extdata/mni_brain.nii.gz

inst/tinytest/flirt.mat

inst/tinytest/test-15-affine.R inst/tinytest/test-20-niftyreg.R inst/tinytest/test-25-transform.R inst/tinytest/test-30-multireg.R man/affine.Rd man/applyTransform.Rd man/buildAffine.Rd man/composeTransforms.Rd man/decomposeAffine.Rd man/deformationField.Rd man/forward.Rd man/halfTransform.Rd man/invertAffine.Rd man/isImage.Rd man/jacobian.Rd man/niftyreg.Rd man/niftyreg.linear.Rd man/niftyreg.nonlinear.Rd man/readAffine.Rd man/readNifti.Rd man/reexports.Rd man/saveTransform.Rd man/similarity.Rd man/translate.Rd man/writeAffine.Rd

src/.gitignore

src/AffineMatrix.cpp

src/AffineMatrix.h

src/DeformationField.cpp

src/DeformationField.h

src/Makevars.in

src/Makevars.win

src/RNifti.cpp

src/aladin.cpp

src/aladin.h

src/f3d.cpp

src/f3d.h

src/helpers.cpp

src/helpers.h

src/main.cpp

src/nifti1_io.h

src/reg-lib/AffineDeformationFieldKernel.h

src/reg-lib/AladinContent.cpp

src/reg-lib/AladinContent.h

src/reg-lib/BlockMatchingKernel.h

src/reg-lib/ConvolutionKernel.h

src/reg-lib/Kernel.h

src/reg-lib/KernelFactory.h

src/reg-lib/Kernels.h

src/reg-lib/OptimiseKernel.h

src/reg-lib/Platform.cpp

src/reg-lib/Platform.h

src/reg-lib/ResampleImageKernel.h

src/reg-lib/_reg_aladin.cpp

src/reg-lib/_reg_aladin.h

src/reg-lib/_reg_aladin_sym.cpp

src/reg-lib/_reg_aladin_sym.h

src/reg-lib/_reg_base.cpp

src/reg-lib/_reg_base.h

src/reg-lib/_reg_f3d.cpp

src/reg-lib/_reg_f3d.h

src/reg-lib/_reg_f3d2.cpp

src/reg-lib/_reg_f3d2.h

src/reg-lib/_reg_f3d_sym.cpp

src/reg-lib/_reg_f3d_sym.h

src/reg-lib/cpu/CPUAffineDeformationFieldKernel.cpp

src/reg-lib/cpu/CPUAffineDeformationFieldKernel.h

src/reg-lib/cpu/CPUBlockMatchingKernel.cpp

src/reg-lib/cpu/CPUBlockMatchingKernel.h

src/reg-lib/cpu/CPUConvolutionKernel.cpp

src/reg-lib/cpu/CPUConvolutionKernel.h

src/reg-lib/cpu/CPUKernelFactory.cpp

src/reg-lib/cpu/CPUKernelFactory.h

src/reg-lib/cpu/CPUOptimiseKernel.cpp

src/reg-lib/cpu/CPUOptimiseKernel.h

src/reg-lib/cpu/CPUResampleImageKernel.cpp

src/reg-lib/cpu/CPUResampleImageKernel.h

src/reg-lib/cpu/_reg_blockMatching.cpp

src/reg-lib/cpu/_reg_blockMatching.h

src/reg-lib/cpu/_reg_globalTrans.cpp

src/reg-lib/cpu/_reg_globalTrans.h

src/reg-lib/cpu/_reg_localTrans.cpp

src/reg-lib/cpu/_reg_localTrans.h

src/reg-lib/cpu/_reg_localTrans_jac.cpp

src/reg-lib/cpu/_reg_localTrans_jac.h

src/reg-lib/cpu/_reg_localTrans_regul.cpp

src/reg-lib/cpu/_reg_localTrans_regul.h

src/reg-lib/cpu/_reg_macros.h

src/reg-lib/cpu/_reg_maths.cpp

src/reg-lib/cpu/_reg_maths.h

src/reg-lib/cpu/_reg_maths_eigen.cpp

src/reg-lib/cpu/_reg_maths_eigen.h

src/reg-lib/cpu/_reg_measure.h

src/reg-lib/cpu/_reg_nmi.cpp

src/reg-lib/cpu/_reg_nmi.h

src/reg-lib/cpu/_reg_optimiser.cpp

src/reg-lib/cpu/_reg_optimiser.h

src/reg-lib/cpu/_reg_resampling.cpp

src/reg-lib/cpu/_reg_resampling.h

src/reg-lib/cpu/_reg_splineBasis.cpp

src/reg-lib/cpu/_reg_splineBasis.h

src/reg-lib/cpu/_reg_tools.cpp

src/reg-lib/cpu/_reg_tools.h

tests/tinytest.R

tools/figures/house-1.png

tools/figures/house-bw-1.png

tools/figures/house-halfskewed-1.png

tools/figures/house-reskewed-1.png

tools/figures/house-skewed-1.png

tools/figures/house-transformed1-1.png

tools/figures/house-transformed2-1.png

tools/m4/ax_openmp.m4

jonclayden/RNiftyReg documentation built on Oct. 11, 2024, noon

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jonclayden/RNiftyReg
Image Registration Using the 'NiftyReg' Library

Files in jonclayden/RNiftyReg
Image Registration Using the 'NiftyReg' Library

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jonclayden/RNiftyReg Image Registration Using the 'NiftyReg' Library

Files in jonclayden/RNiftyReg Image Registration Using the 'NiftyReg' Library

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We want your feedback!

jonclayden/RNiftyReg
Image Registration Using the 'NiftyReg' Library

Files in jonclayden/RNiftyReg
Image Registration Using the 'NiftyReg' Library