Files in josephwb/chronosCI

Molecular Dating by Penalised Likelihood and Maximum Likelihood

R/CV.R R/chronosCI.R R/drawChronosCI.R R/qage.R R/rage.R README.md examples/Felidae/script_Felidae.R examples/simulations/COMMON_CODE.R examples/simulations/NELSI_RCodeOnly/allnode.times.R examples/simulations/NELSI_RCodeOnly/annotatedTreeReader.R examples/simulations/NELSI_RCodeOnly/dist.topo.normalised.R examples/simulations/NELSI_RCodeOnly/distunlab.R examples/simulations/NELSI_RCodeOnly/get.ancestor.nodes.branches.R examples/simulations/NELSI_RCodeOnly/get.branches.age.sorted.R examples/simulations/NELSI_RCodeOnly/get.clock.data.R examples/simulations/NELSI_RCodeOnly/get.deepest.br.length.R examples/simulations/NELSI_RCodeOnly/get.descending.nodes.branches.R examples/simulations/NELSI_RCodeOnly/get.df.R examples/simulations/NELSI_RCodeOnly/get.external.branch.length.R examples/simulations/NELSI_RCodeOnly/get.first.node.height.R examples/simulations/NELSI_RCodeOnly/get.internal.branch.length.R examples/simulations/NELSI_RCodeOnly/get.lineage.time.rate.R examples/simulations/NELSI_RCodeOnly/get.ltt.summary.R examples/simulations/NELSI_RCodeOnly/get.mrca.R examples/simulations/NELSI_RCodeOnly/get.oldest.branch.length.R examples/simulations/NELSI_RCodeOnly/get.rate.descendant.pairs.R examples/simulations/NELSI_RCodeOnly/get.rtt.dist.R examples/simulations/NELSI_RCodeOnly/get.tree.data.matrix.R examples/simulations/NELSI_RCodeOnly/intnode.times.R examples/simulations/NELSI_RCodeOnly/make.lsd.dates.R examples/simulations/NELSI_RCodeOnly/mid.edge.ages.R examples/simulations/NELSI_RCodeOnly/node.to.tip.dist.R examples/simulations/NELSI_RCodeOnly/pathnode.R examples/simulations/NELSI_RCodeOnly/plot.ratesim.R examples/simulations/NELSI_RCodeOnly/simulate.autocor.kishino.R examples/simulations/NELSI_RCodeOnly/simulate.autocor.thorne.R examples/simulations/NELSI_RCodeOnly/simulate.clock.R examples/simulations/NELSI_RCodeOnly/simulate.dpp.R examples/simulations/NELSI_RCodeOnly/simulate.rate.R examples/simulations/NELSI_RCodeOnly/simulate.tdep.ho.R examples/simulations/NELSI_RCodeOnly/simulate.uncor.exp.R examples/simulations/NELSI_RCodeOnly/simulate.uncor.gamma.R examples/simulations/NELSI_RCodeOnly/simulate.uncor.lnorm.R examples/simulations/NELSI_RCodeOnly/simulate.white.noise.R examples/simulations/NELSI_RCodeOnly/stemmy.R examples/simulations/NELSI_RCodeOnly/sum.descending.branches.R examples/simulations/NELSI_RCodeOnly/trann2trdat.R examples/simulations/rate.CorrTest.R examples/simulations/run_1/analysis_post_sim_ModelSelection.R examples/simulations/run_1/sim_ModelSelection_Oct2021.R examples/simulations/run_2/sim_CrossValivation_Oct2021.R examples/simulations/run_3/analysis_postSim.R examples/simulations/run_3/sim_ConfidenceIntervals_Oct2021.R examples/simulations/run_4/analysis_postSim_ModelMisspecified.R examples/simulations/run_4/sim_ModelMisspecified_Dec2021.R man/CV.Rd man/chronosCI.Rd man/drawChronosCI.Rd man/qage.Rd man/rage.Rd