API for jrboyd/peakrefine
Peak Refinement Metric Gathering and Evalutation by Motif Enrichment
| Global functions | |
|---|---|
| .calc_cross_corr | Man page Source code |
| .calc_stranded_coverage | Man page Source code |
| .extend_reads | Man page Source code |
| .fetch_bam_stranded | Man page Source code |
| .my_mode | Source code |
| .recalc_MotifEnrichmentResults | Source code |
| .remove_duplicates | Man page Source code |
| .shift_anchor | Man page Source code |
| .view_gr_by_window_sample | Man page Source code |
| PWMEnrich.affinitySequenceSet | Man page |
| PWMEnrich.cloverScore | Man page |
| PeakRefiner | Man page Source code |
| PeakRefiner-class | Man page |
| add_MotifEnrichmentResults | Man page Source code |
| bfcif | Man page Source code |
| calcCorrMetrics | Man page |
| calcMotifEnrichment | Man page |
| calcSCCMetrics | Man page |
| crossCorrByExtension | Man page Source code |
| crossCorrByExtensionFull | Man page Source code |
| crossCorrByRle | Man page Source code |
| crossCorrByShift | Man page Source code |
| gather_metrics | Source code |
| getReadLength | Man page Source code |
| harmonize_seqlengths | Man page Source code |
| initialize,PeakRefiner-method | Man page |
| pre_motif | Man page Source code |
| scoreMetrics | Man page |
| score_motif | Man page Source code |
| subset_MotifEnrichmentResults | Man page Source code |
