jsilve24/TeacupCerberus: Bayesian Estimation of Covariation Between and Within Two Multivariate Count Datasets

Estimates covariation within and between two count datasets where the counts contain multinomial variation (e.g., sequence count data like microbiome 16S or bulk/single-cell RNA-seq). The model outputs Bayesian posterior samples over covariance matricies. The entire posterior reflects uncertainty in the true covariation due to multinomial counting.

Getting started

Package details

MaintainerJustin Silverman <Justin.Silverman@duke.edu>
LicenseGPL-2 | GPL-3
Version0.1.1
URL https://github.com/jsilve24/TeacupCerberus https://jsilve24.github.io/TeacupCerberus/index.html
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("jsilve24/TeacupCerberus")
jsilve24/TeacupCerberus documentation built on Nov. 4, 2019, 3:25 p.m.