.Rbuildignore
          
        
          
            
            .gitignore
          
        
          
            
            DESCRIPTION
          
        
          
            
            NAMESPACE
          
        
          
            
            R/calculate_features.R
          
        
          
            
            R/filter2.R
          
        
          
            
            R/filters.R
          
        
          
            
            R/superpixels.R
          
        
          
            
            R/utils.R
          
        
          
            
            R/workflow.R
          
        
          
            
            README.Rmd
          
        
          
            
            README.md
          
        
          
            
            _pkgdown.yml
          
        
          
            
            benchmarking/bench_parallel_calc.R
          
        
          
            
            benchmarking/lazy_calc_feat.R
          
        
          
            
            benchmarking/precomputed_filter.R
          
        
          
            
            benchmarking/precomputed_filter.html
          
        
          
            
            benchmarking/precomputed_filter.knit.md
          
        
          
            
            benchmarking/precomputed_filter.spin.R
          
        
          
            
            benchmarking/precomputed_filter.spin.Rmd
          
        
          
            
            benchmarking/precomputed_filter.utf8.md
          
        
          
            
            benchmarking/precomputed_filter_files/figure-html/unnamed-chunk-1-1.png
          
        
          
            
            benchmarking/precomputed_filter_files/figure-html/unnamed-chunk-1-2.png
          
        
          
            
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            benchmarking/precomputed_filter_files/figure-html/unnamed-chunk-1-5.png
          
        
          
            
            docs/404.html
          
        
          
            
            docs/articles/alternative_classifiers.html
          
        
          
            
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            docs/articles/classification_performance.html
          
        
          
            
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            docs/articles/classification_performance_files/figure-html/unnamed-chunk-9-1.png
          
        
          
            
            docs/articles/features.html
          
        
          
            
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            docs/articles/index.html
          
        
          
            
            docs/articles/performance.html
          
        
          
            
            docs/articles/performance_files/figure-html/unnamed-chunk-12-1.png
          
        
          
            
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            docs/articles/performance_files/figure-html/unnamed-chunk-9-2.png
          
        
          
            
            docs/articles/time_performance.html
          
        
          
            
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            docs/authors.html
          
        
          
            
            docs/docsearch.css
          
        
          
            
            docs/docsearch.js
          
        
          
            
            docs/index.html
          
        
          
            
            docs/link.svg
          
        
          
            
            docs/pkgdown.css
          
        
          
            
            docs/pkgdown.js
          
        
          
            
            docs/pkgdown.yml
          
        
          
            
            docs/reference/build_train_multi.html
          
        
          
            
            docs/reference/calc_features.html
          
        
          
            
            docs/reference/circular_hough_transform.html
          
        
          
            
            docs/reference/classify_img.html
          
        
          
            
            docs/reference/classify_img_sliced.html
          
        
          
            
            docs/reference/clean_image_border.html
          
        
          
            
            docs/reference/correct_light.html
          
        
          
            
            docs/reference/display_filters-1.png
          
        
          
            
            docs/reference/display_filters.html
          
        
          
            
            docs/reference/dog_filter.html
          
        
          
            
            docs/reference/figures/README-unnamed-chunk-10-1.png
          
        
          
            
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            docs/reference/figures/README-unnamed-chunk-9-1.png
          
        
          
            
            docs/reference/filter2.prepared.html
          
        
          
            
            docs/reference/filter_masks.html
          
        
          
            
            docs/reference/generate_edges.html
          
        
          
            
            docs/reference/generate_overlay.html
          
        
          
            
            docs/reference/get_classifications.html
          
        
          
            
            docs/reference/hello.html
          
        
          
            
            docs/reference/hough_circle_draw.html
          
        
          
            
            docs/reference/index.html
          
        
          
            
            docs/reference/predict_img.html
          
        
          
            
            docs/reference/readImageBw.html
          
        
          
            
            docs/reference/slic.html
          
        
          
            
            docs/reference/sobel_filter.html
          
        
          
            
            docs/reference/variance_filter.html
          
        
          
            
            inst/extdata/4T1-shNT-1.png
          
        
          
            
            inst/extdata/4T1-shNT-1.tif
          
        
          
            
            inst/extdata/4T1-shNT-1_layer1.png
          
        
          
            
            inst/extdata/4T1-shNT-1_layer2.png
          
        
          
            
            inst/extdata/tiny_4T1-shNT-1.png
          
        
          
            
            inst/extdata/tiny_4T1-shNT-1_layer1.png
          
        
          
            
            inst/extdata/tiny_4T1-shNT-1_layer2.png
          
        
          
            
            man/build_train_multi.Rd
          
        
          
            
            man/calc_features.Rd
          
        
          
            
            man/circular_hough_transform.Rd
          
        
          
            
            man/classify_img.Rd
          
        
          
            
            man/classify_img_sliced.Rd
          
        
          
            
            man/clean_image_border.Rd
          
        
          
            
            man/correct_light.Rd
          
        
          
            
            man/display_filters.Rd
          
        
          
            
            man/dog_filter.Rd
          
        
          
            
            man/figures/README-unnamed-chunk-10-1.png
          
        
          
            
            man/figures/README-unnamed-chunk-11-1.png
          
        
          
            
            man/figures/README-unnamed-chunk-12-1.png
          
        
          
            
            man/figures/README-unnamed-chunk-13-1.png
          
        
          
            
            man/figures/README-unnamed-chunk-14-1.png
          
        
          
            
            man/figures/README-unnamed-chunk-3-1.png
          
        
          
            
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            man/figures/README-unnamed-chunk-5-8.png
          
        
          
            
            man/figures/README-unnamed-chunk-6-1.png
          
        
          
            
            man/figures/README-unnamed-chunk-7-1.png
          
        
          
            
            man/figures/README-unnamed-chunk-8-1.png
          
        
          
            
            man/figures/README-unnamed-chunk-9-1.png
          
        
          
            
            man/filter2.prepared.Rd
          
        
          
            
            man/filter_masks.Rd
          
        
          
            
            man/generate_edges.Rd
          
        
          
            
            man/generate_overlay.Rd
          
        
          
            
            man/get_classifications.Rd
          
        
          
            
            man/hough_circle_draw.Rd
          
        
          
            
            man/predict_img.Rd
          
        
          
            
            man/readImageBw.Rd
          
        
          
            
            man/slic.Rd
          
        
          
            
            man/sobel_filter.Rd
          
        
          
            
            man/variance_filter.Rd
          
        
          
            
            tests/testthat.R
          
        
          
            
            tests/testthat/Rplots.pdf
          
        
          
            
            tests/testthat/test-compile_calc_features.R
          
        
          
            
            tests/testthat/test-prepared_filter.R
          
        
          
            
            tests/testthat/test-spatial_filters.R
          
        
          
            
            tests/testthat/test-spatial_transformations.R
          
        
          
            
            tests/testthat/test-workflow.R
          
        
          
            
            vignettes/.gitignore
          
        
          
            
            vignettes/alternative_classifiers.Rmd
          
        
          
            
            vignettes/classification_performance.Rmd
          
        
          
            
            vignettes/features.Rmd
          
        
          
            
            vignettes/time_performance.Rmd