Man pages for jstaf/actmon
A tool for parsing output produced by TriKinetics' Drosophila Activity Monitor.
| barPlot | Create a bar plot of an experiment |
| byAttribute | Subset data by an attribute |
| calcActivityIndex | Calculate activity index |
| calcANOVA | Calculate statistics for a dataset |
| calcAttribMeans | Calculate average values by attribute |
| calcBouts | Calculate bout number and duration for a single animal |
| calcMeanBout | Calculate mean duration of each sleep bout |
| calcNumBouts | Calculate mean number of sleep bouts per day |
| calcSleep | Calculate sleep |
| calcSurvivalTime | Calculate time of death |
| calcTukeyHSD | Run a Tukey HSD post-hoc test |
| catExperiments | Concatenate experiments |
| DAM-class | DAM experiment object |
| dropAnimals | Remove an animal from the experiment |
| dropAttribute | Remove data by an attribute |
| dropDead | Automatically remove dead animals |
| exportDataset | Export a DAM experiment |
| findLightInterval | Calculate the lighting interval |
| getInterval | Determine measurement interval |
| getLightChanges | Find light changes in a dataset |
| getSleepBouts | Calculate duration and number of sleep bouts |
| getVals | Retrieve values from a DAM dataframe as a matrix. |
| isAsleep | Calculate sleep values |
| linePlot | Create a line plot of an experiment |
| listAttributes | Get the attributes of a dataset |
| listAttribVals | Get attribute values |
| listToDataframe | Convert a list to a dataframe |
| newExperiment | Create a DAM experiment |
| orderAttribVals | Change attribute order |
| percentToMins | Convert sleep percentages to minutes |
| stdError | Calculate standard error of the mean |
| subsetTime | Subsetting data by time |
| survivalTime | Computes the index at which a fly died in the data |
| syncLightCycle | Synchronize experiment to its light cycle |
| toAvgDay | Compute average day |
| toInterval | Collapse a dataset to a target time interval |
| toSeconds | Convert a time to seconds |
| toTidy | Convert a dataset to TidyR format |
| whichChanged | Find changes in a vector |
