Man pages for jtheorell/flowJake
Tools for spectral unmixing of overdetermined flow-cytometry files. And other nice things.
| addKeysFromName | Dissociate the name of flow frames into multiple keys |
| allHist | Plotting all variables as histograms |
| appendFFCols | This function is a slightly adjusted copy of the... |
| arcTrans | Efficient inverse hyperbolic cosine transformation |
| batchNorm | Batch normalisation |
| batchNormCtrlSetup | Setup the file used for batch normalisation |
| compCtrls | Compensation controls |
| correcMatCreate | Generate a correction matrix for cytometry data analysis |
| correctUnmix | Correct defects in spectral unmixing by compensation |
| csvSet2LongDf | Convert a set of csv files to one long dataframe with all... |
| filterOut | Select events based on filter |
| flowSet2LongDf | Convert a flowSet to one long dataframe with all identifiers... |
| fullPanel | Fully stained sample |
| madFilter | Median absolute deviation-based automatic filters for... |
| oneDZeroTrim | importFrom flowCore exprs importFrom BiocGenerics nrow ncol... |
| oneVsAllPlot | Plotting all variables against a single variable |
| peakIdenti | Peak identification for higher-level functions. |
| ridgePlot | Density plots showing gates for all files in a flowSet |
| specMat | Spectral unmixing matrix |
| specMatCalc | Calculating the matrix used for spectral unmixing |
| specUnmix | Spectral unmixing of cytometry files |
| turnDerGate | Function used to generate automated gates on large sets of... |
