Files in jtimonen/odemodeling

Building, fitting, and validating Bayesian ODE models in 'Stan'

NEWS.md R/classes-fit.R R/classes-model.R R/classes-solver.R R/classes-standecl.R R/main-declarations.R R/main-examples.R R/main-functions.R R/main-model.R R/main-plot.R R/main-solvers.R R/odemodeling-package.R R/utils-create_input.R R/utils-misc.R R/utils-stancode.R R/utils-standecl.R R/zzz.R README.md data-raw/lynxhare.R dev/covr.R dev/exports.R dev/lint.R dev/style.R man/AdaptiveOdeSolver.Rd man/FixedNumStepsOdeSolver.Rd man/OdeModel.Rd man/OdeModelFit.Rd man/OdeModelGQ.Rd man/OdeModelMCMC.Rd man/OdeSolver.Rd man/StanArray.Rd man/StanDeclaration.Rd man/StanDimension.Rd man/StanMatrix.Rd man/StanParameter.Rd man/StanTransformation.Rd man/StanVariable.Rd man/StanVector.Rd man/StanVectorArray.Rd man/compare_odefits.Rd man/example_ode_model.Rd man/lynxhare.Rd man/ode_model.Rd man/odemodeling-package.Rd man/odesolvers.Rd man/odesolvers_lists.Rd man/plot_metric.Rd man/stan_array.Rd man/stan_dim.Rd man/stan_matrix.Rd man/stan_param.Rd man/stan_transform.Rd man/stan_var.Rd man/stan_vector.Rd man/stan_vector_array.Rd tests/testthat.R tests/testthat/test-classes-model.R tests/testthat/test-main-model.R tests/testthat/test-main-solvers.R tests/testthat/test-main_declarations.R tests/testthat/test-utils-stancode.R tests/testthat/test-workflow-gsir.R tests/testthat/test-workflow-lv.R tests/testthat/test-workflow-tmdd.R vignettes/tutorial.Rmd