Files in kamalfartiyal84/methylPipe
Base resolution DNA methylation data analysis
DESCRIPTION
NAMESPACE
NEWS
R/AllClasses.R
R/Allfunctions.R
R/BSdata-methods.R
R/BSdataSet-methods.R
R/GEcollection-methods.R
R/GElist-methods.R
R/zzz.R
exec/methinfo.pl
exec/pool_reads.py
inst/CITATION
inst/extdata/DMRs.Rdata
inst/extdata/GR_chr20.Rdata
inst/extdata/H1_chr20_CG_10k.txt
inst/extdata/H1_chr20_CG_10k_tabix_out.txt.gz
inst/extdata/H1_chr20_CG_10k_tabix_out.txt.gz.tbi
inst/extdata/IMR90_chr20_CG_10k_tabix_out.txt.gz
inst/extdata/IMR90_chr20_CG_10k_tabix_out.txt.gz.tbi
inst/extdata/gec.H1.Rdata
inst/extdata/gec.IMR90.Rdata
inst/extdata/test_methcall/methylPipe_ex.sam
inst/extdata/uncov_GR.Rdata
man/BSdata-class.Rd
man/BSdataSet-class.Rd
man/BSprepare.Rd
man/GEcollection-class.Rd
man/GElist-class.Rd
man/chiCombP.Rd
man/consolidateDMRs.Rd
man/extractBinGRanges.Rd
man/findDMR.Rd
man/findPMDs.Rd
man/getCpos.Rd
man/getCposDensity.Rd
man/mCsmoothing.Rd
man/mapBSdata2GRanges.Rd
man/meth.call.Rd
man/methstats.Rd
man/methylPipe-package.Rd
man/plotMeth.Rd
man/pool.reads.Rd
man/process.hmc.Rd
man/profileDNAmetBin.Rd
man/splitChrs.Rd
man/tabixdata2GR.Rd
src/R_init_methylPipe.c
src/binning.c
src/binning.h
vignettes/methylPipe.rnw
