Man pages for karakulahg/TEffectR
| apply_lm | Model gene expression levels using the given list of... |
| count_repeats | Count uniquely mapped reads to the repeat regions of interest... |
| get_intervals | Retrieve the genomic locations of all genes in a given read... |
| get_overlaps | Find overlapping intervals. |
| rm_format | Parse a given RepeatMasker annotation file. |
| summarize_repeat_counts | To summarize counts of repeats as gene name and repeat family |
