Files in karissawhiting/cbioportalR
Browse and Query Clinical and Genomic Data from cBioPortal
.Rbuildignore
.github/.gitignore
.github/CONTRIBUTING.md
.github/pull_request_template.md
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/test-coverage.yaml
.gitignore
CODE_OF_CONDUCT.md
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/authenticate.R
R/by_database.R
R/by_genes_or_panel.R
R/by_patients.R
R/by_samples.R
R/by_studies.R
R/cbioportalr-package.R
R/cbp_api.R
R/data.R
R/genomics_by_sample.R
R/genomics_by_study.R
R/utils-pipe.R
R/utils.R
README.Rmd
README.md
cbioportalR.Rproj
codecov.yml
codemeta.json
cran-comments.md
data-raw/diagram.R
data-raw/impact-gene-info.R
data-raw/impact_gene_info_2021-02-23.RData
data/impact_gene_info.rda
inst/WORDLIST
man/available_clinical_attributes.Rd
man/available_gene_panels.Rd
man/available_patients.Rd
man/available_profiles.Rd
man/available_sample_lists.Rd
man/available_samples.Rd
man/available_studies.Rd
man/cbioportalR-package.Rd
man/cbp_api.Rd
man/dot-get_clinical_by_list_item.Rd
man/dot-get_clinical_pat_by_list_item.Rd
man/dot-get_data_by_sample.Rd
man/dot-get_data_by_study.Rd
man/figures/cbp-diagram-archive.png
man/figures/html_object.html
man/figures/logo.png
man/figures/readme-cbp-diagram-archive.png
man/figures/readme-cbp-diagram.png
man/figures/svg-cbp-diagram.svg
man/figures/svg_object.svg
man/get_alias.Rd
man/get_cbioportal_token.Rd
man/get_clinical_by_patient.Rd
man/get_clinical_by_sample.Rd
man/get_clinical_by_study.Rd
man/get_cna_by_sample.Rd
man/get_cna_by_study.Rd
man/get_entrez_id.Rd
man/get_fusions_by_sample.Rd
man/get_fusions_by_study.Rd
man/get_gene_panel.Rd
man/get_genes.Rd
man/get_genetics_by_sample.Rd
man/get_genetics_by_study.Rd
man/get_hugo_symbol.Rd
man/get_mutations_by_sample.Rd
man/get_mutations_by_study.Rd
man/get_panel_by_sample.Rd
man/get_samples_by_patient.Rd
man/get_segments_by_sample.Rd
man/get_segments_by_study.Rd
man/get_study_info.Rd
man/impact_gene_info.Rd
man/lookup_id.Rd
man/null-default.Rd
man/pipe.Rd
man/set_cbioportal_db.Rd
man/test_cbioportal_db.Rd
pkgdown/_pkgdown.yml
pkgdown/extra.css
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
tests/spelling.R
tests/testthat.R
tests/testthat/helper.R
tests/testthat/test-authentication.R
tests/testthat/test-by-db.R
tests/testthat/test-by-patient.R
tests/testthat/test-by-sample.R
tests/testthat/test-by-study.R
tests/testthat/test-cbp_api.R
tests/testthat/test-genes.R
tests/testthat/test-genomics-by-sample.R
tests/testthat/test-genomics-by-study.R
vignettes/.gitignore
vignettes/internal-structure.Rmd
vignettes/overview-of-workflow.Rmd
vignettes/overview-of-workflow.Rmd.orig
