API for kasparmartens/ensembleHMM
Ensemble MCMC for Hidden Markov Models
| Global functions | |
|---|---|
| FHMM | Source code |
| add_noise | Source code |
| compute_marginal_distribution | Source code |
| construct_all_hamming_balls | Source code |
| construct_all_restricted_space | Source code |
| construct_restricted_space | Source code |
| convert_X_to_x | Source code |
| correct_states | Source code |
| crossover | Source code |
| crossover_mat | Source code |
| crossovers | Source code |
| decimal_to_binary_mapping | Source code |
| ensemble_FHMM | Source code |
| ensemble_discrete | Source code |
| ensemble_gaussian | Source code |
| forward_backward | Source code |
| forward_backward_fast | Source code |
| forward_backward_rcpp | Source code |
| generate_FHMM | Source code |
| generate_FHMM_transition_mat | Source code |
| generate_discrete_HMM | Source code |
| generate_discrete_obs | Source code |
| generate_gaussian_obs | Source code |
| generate_nonmarkov_seq | Source code |
| generate_t_obs | Source code |
| gibbs | Source code |
| gibbs_sampling_hmm | Source code |
| hamming_ball | Source code |
| hmm_loglikelihood | Source code |
| initial_state_update | Source code |
| match_col | Source code |
| parallel_tempering | Source code |
| plot_logposterior | Source code |
| plot_logposteriors | Source code |
| plot_trace_of_mu | Source code |
| plot_traces_of_mu | Source code |
| postprocess_chains | Source code |
| postprocess_chains.FHMM | Source code |
| postprocess_chains.ensembleHMM | Source code |
| prop_transitions | Source code |
| rdirichlet_mat | Source code |
| summarise_crossover_stats | Source code |
| summarise_transition_mat | Source code |
| transition_mat_update | Source code |
| visualise_accuracy_and_switch_rate | Source code |
| visualise_crossovers | Source code |
| visualise_crossovers_helper | Source code |
| visualise_discrete_obs | Source code |
| visualise_gaussian_obs | Source code |
| visualise_hidden_states | Source code |
| visualise_hidden_states_parallel_tempering | Source code |
| visualise_trace_of_X | Source code |
| visualise_trace_of_x | Source code |
| visualise_trace_of_x.FHMM | Source code |
| visualise_trace_of_x.ensembleHMM | Source code |
| visualise_traces_of_X | Source code |
| visualise_traces_of_x | Source code |
| visualise_transition_mat | Source code |
| visualise_transition_mat_parallel_tempering | Source code |
