Man pages for katenambiar/pmpa
Peptide Microarray Pre-Processing and Analysis
| annotateArrays-methods | Adds annotation to peptide microarray data |
| arrayBatchCorrect-methods | Batch Correction for peptide array data (using ComBat... |
| arrayBGcorr-methods | Local background feature correction algorithms |
| arrayControlMA-methods | Create M and A values for each peptide array using a negative... |
| arrayNorm-methods | Normalisation |
| arraySecFilter-methods | Filter Secondary Antibody Binding Peptide Probes |
| arraySummary-methods | Summarises intra-array replicates with flagged values... |
| bg-methods | Background Intensity Accessor |
| blockScaleNorm-methods | Within array scaling normalisation of blocks (print-tip... |
| bmean-methods | Mean Background Intensity Accessor |
| bmedian-methods | Median Background Intensity Accessor |
| dia-methods | Diameter Accessor |
| fg-methods | Foreground Intensity Accessor |
| filterGMM | Filter peptide microarray data |
| flags-methods | Flags Accessor |
| getArrayLayout-methods | Array Layout Accessor |
| lmNorm | Linear Model Normalisation |
| maplot-methods | MA-Plot |
| plotImage-methods | Image plot of microarray data |
| plotSubarrayBlocks-methods | Boxplots of array blocks (print tip groups) from peptide... |
| plotSubarrayClosestValues-methods | Scatter plot of closest two values from subarrays of peptide... |
| plotSubarrayDensity-methods | Density plots of subarrays from peptide microarray data |
| plotSubarrayScatter-methods | Scatter plots of subarrays from peptide microarray data |
| pmpa-package | Pre-processing and analysis of peptide microarray data. |
| readArrayHeader | Reads header information from GPR files |
| readArrays | Read peptide microarray data from GPR files |
| scaleNormGMM | Scale Normalisation using GMM |
| scaleNorm-methods | Scale Normalisation |
