Files in kelsiereinaltt/GSEApackage
GSEA Analysis and Plotting Function
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.gitignore
DESCRIPTION
GSEApackage.Rproj
NAMESPACE
R/.DS_Store
R/GSEA.1.0-mod.R
R/Run.GSEA.R
R/create_phenoinput.R
R/gene_input.R
R/plot.ES.R
R/r_params.txt
README.md
data/C1.gs.rda
data/C2.cgp.gs.rda
data/C2.cp.biocarta.gs.rda
data/C2.cp.gs.rda
data/C2.cp.kegg.gs.rda
data/C2.cp.reactome.gs.rda
data/C2.gs.rda
data/C3.gs.rda
data/C3.mir.gs.rda
data/C3.tft.gs.rda
data/C4.cgn.gs.rda
data/C4.cm.gs.rda
data/C4.gs.rda
data/C5.bp.gs.rda
data/C5.cc.gs.rda
data/C5.gs.rda
data/C5.mf.gs.rda
data/C6.gs.rda
data/C7.gs.rda
data/ENCODE.db.rda
data/ITFP.db.rda
data/Kadoki_ligands.db.rda
data/Kadoki_receptors.db.rda
data/Marbach2016.db.rda
data/Neph2012.db.rda
data/Neph2012_AcutePromyelocyticLeukemia.db.rda
data/Neph2012_AdultBloodMicrovascularEndothelialCells.db.rda
data/Neph2012_AdultDermalFibroblast.db.rda
data/Neph2012_AmnioticEpithelialCells.db.rda
data/Neph2012_AorticAdventitialFibroblasts.db.rda
data/Neph2012_AstrocytesHippocampal.db.rda
data/Neph2012_Bcells.db.rda
data/Neph2012_Blymphocyte.db.rda
data/Neph2012_Blymphocyte2.db.rda
data/Neph2012_Brain.db.rda
data/Neph2012_CardiacFibroblasts.db.rda
data/Neph2012_CardiacMyocytes.db.rda
data/Neph2012_ChoroidPlexusEpithelialCells.db.rda
data/Neph2012_EmbryonicStemCell.db.rda
data/Neph2012_EsophagealEpithelialCells.db.rda
data/Neph2012_FetalLungFibroblasts.db.rda
data/Neph2012_ForeskinFibroblast.db.rda
data/Neph2012_Heart.db.rda
data/Neph2012_HematopoeticProgenitor.db.rda
data/Neph2012_Hepatocellularcarcinoma.db.rda
data/Neph2012_IrisPigmentEpithelialCells.db.rda
data/Neph2012_Leukemia.db.rda
data/Neph2012_Lung.db.rda
data/Neph2012_LungFibroblasts.db.rda
data/Neph2012_LymphaticMicrovascularEndothelialCells.db.rda
data/Neph2012_MammaryFibroblasts.db.rda
data/Neph2012_NeonatalBloodMicrovascularEndothelialCells.db.rda
data/Neph2012_NeonatalDermalFibroblast.db.rda
data/Neph2012_NeonatalLymphaticMicrovascularEndothelialCells.db.rda
data/Neph2012_Neuroblastoma.db.rda
data/Neph2012_NormalHumanAstrocytes.db.rda
data/Neph2012_PeridontalLigamentFibroblasts.db.rda
data/Neph2012_PulmonaryArteryFibroblasts.db.rda
data/Neph2012_PulmonaryFibroblastsLungTissue.db.rda
data/Neph2012_RenalCorticalEpithelialCells.db.rda
data/Neph2012_SkeletalMuscleMyoblasts.db.rda
data/Neph2012_SkeletalMuscleMyosatellitecells.db.rda
data/Neph2012_Skin.db.rda
data/Neph2012_SmallAirwayEpithelialCells.db.rda
data/Neph2012_Th1Tcells.db.rda
data/Neph2012_VillousMesencymalFibroblastCells.db.rda
data/Neph2012_cellline_key.rda
data/TRED.db.rda
data/TRRUST.db.rda
data/aagmex_expr.rda
data/aagmex_pheno.rda
data/gtex_ann.rda
data/gtex_expr.rda
data/hallmark.gs.rda
data/key.rda
data/transf.rda
data/transm.rda
man/GSEA_Source.Rd
man/GSEAplots.Rd
man/add_to_database.Rd
man/create_geneset_db.Rd
man/create_phenoinput.Rd
man/database_key.Rd
man/get_genesets.Rd
man/get_genesymbols.Rd
man/plot.ES.Rd
results.SUMMARY.RESULTS.REPORT.Female.txt
results.SUMMARY.RESULTS.REPORT.Male.txt
results.pdf
results/results.HALLMARK_ADIPOGENESIS.ESdata.Female.28.txt
results/results.HALLMARK_ADIPOGENESIS.EStags.Female.28.txt
results/results.HALLMARK_ADIPOGENESIS.plot.Female.28.pdf
results/results.HALLMARK_ADIPOGENESIS.report.Female.28.txt
results/results.HALLMARK_ALLOGRAFT_REJECTION.ESdata.Female.5.txt
results/results.HALLMARK_ALLOGRAFT_REJECTION.EStags.Female.5.txt
results/results.HALLMARK_ALLOGRAFT_REJECTION.plot.Female.5.pdf
results/results.HALLMARK_ALLOGRAFT_REJECTION.report.Female.5.txt
results/results.HALLMARK_ANDROGEN_RESPONSE.ESdata.Female.21.txt
results/results.HALLMARK_ANDROGEN_RESPONSE.EStags.Female.21.txt
results/results.HALLMARK_ANDROGEN_RESPONSE.plot.Female.21.pdf
results/results.HALLMARK_ANDROGEN_RESPONSE.report.Female.21.txt
results/results.HALLMARK_ANGIOGENESIS.ESdata.Female.2.txt
results/results.HALLMARK_ANGIOGENESIS.EStags.Female.2.txt
results/results.HALLMARK_ANGIOGENESIS.plot.Female.2.pdf
results/results.HALLMARK_ANGIOGENESIS.report.Female.2.txt
results/results.HALLMARK_APICAL_JUNCTION.ESdata.Male.14.txt
results/results.HALLMARK_APICAL_JUNCTION.EStags.Male.14.txt
results/results.HALLMARK_APICAL_JUNCTION.plot.Male.14.pdf
results/results.HALLMARK_APICAL_JUNCTION.report.Male.14.txt
results/results.HALLMARK_APICAL_SURFACE.ESdata.Female.29.txt
results/results.HALLMARK_APICAL_SURFACE.EStags.Female.29.txt
results/results.HALLMARK_APICAL_SURFACE.plot.Female.29.pdf
results/results.HALLMARK_APICAL_SURFACE.report.Female.29.txt
results/results.HALLMARK_APOPTOSIS.ESdata.Female.19.txt
results/results.HALLMARK_APOPTOSIS.EStags.Female.19.txt
results/results.HALLMARK_APOPTOSIS.plot.Female.19.pdf
results/results.HALLMARK_APOPTOSIS.report.Female.19.txt
results/results.HALLMARK_BILE_ACID_METABOLISM.ESdata.Male.12.txt
results/results.HALLMARK_BILE_ACID_METABOLISM.EStags.Male.12.txt
results/results.HALLMARK_BILE_ACID_METABOLISM.plot.Male.12.pdf
results/results.HALLMARK_BILE_ACID_METABOLISM.report.Male.12.txt
results/results.HALLMARK_CHOLESTEROL_HOMEOSTASIS.ESdata.Male.17.txt
results/results.HALLMARK_CHOLESTEROL_HOMEOSTASIS.EStags.Male.17.txt
results/results.HALLMARK_CHOLESTEROL_HOMEOSTASIS.plot.Male.17.pdf
results/results.HALLMARK_CHOLESTEROL_HOMEOSTASIS.report.Male.17.txt
results/results.HALLMARK_COAGULATION.ESdata.Female.6.txt
results/results.HALLMARK_COAGULATION.EStags.Female.6.txt
results/results.HALLMARK_COAGULATION.plot.Female.6.pdf
results/results.HALLMARK_COAGULATION.report.Female.6.txt
results/results.HALLMARK_COMPLEMENT.ESdata.Female.10.txt
results/results.HALLMARK_COMPLEMENT.EStags.Female.10.txt
results/results.HALLMARK_COMPLEMENT.plot.Female.10.pdf
results/results.HALLMARK_COMPLEMENT.report.Female.10.txt
results/results.HALLMARK_DNA_REPAIR.ESdata.Male.8.txt
results/results.HALLMARK_DNA_REPAIR.EStags.Male.8.txt
results/results.HALLMARK_DNA_REPAIR.plot.Male.8.pdf
results/results.HALLMARK_DNA_REPAIR.report.Male.8.txt
results/results.HALLMARK_E2F_TARGETS.ESdata.Male.3.txt
results/results.HALLMARK_E2F_TARGETS.EStags.Male.3.txt
results/results.HALLMARK_E2F_TARGETS.plot.Male.3.pdf
results/results.HALLMARK_E2F_TARGETS.report.Male.3.txt
results/results.HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION.ESdata.Female.3.txt
results/results.HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION.EStags.Female.3.txt
results/results.HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION.plot.Female.3.pdf
results/results.HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION.report.Female.3.txt
results/results.HALLMARK_ESTROGEN_RESPONSE_EARLY.ESdata.Male.11.txt
results/results.HALLMARK_ESTROGEN_RESPONSE_EARLY.EStags.Male.11.txt
results/results.HALLMARK_ESTROGEN_RESPONSE_EARLY.plot.Male.11.pdf
results/results.HALLMARK_ESTROGEN_RESPONSE_EARLY.report.Male.11.txt
results/results.HALLMARK_ESTROGEN_RESPONSE_LATE.ESdata.Male.7.txt
results/results.HALLMARK_ESTROGEN_RESPONSE_LATE.EStags.Male.7.txt
results/results.HALLMARK_ESTROGEN_RESPONSE_LATE.plot.Male.7.pdf
results/results.HALLMARK_ESTROGEN_RESPONSE_LATE.report.Male.7.txt
results/results.HALLMARK_FATTY_ACID_METABOLISM.ESdata.Male.18.txt
results/results.HALLMARK_FATTY_ACID_METABOLISM.EStags.Male.18.txt
results/results.HALLMARK_FATTY_ACID_METABOLISM.plot.Male.18.pdf
results/results.HALLMARK_FATTY_ACID_METABOLISM.report.Male.18.txt
results/results.HALLMARK_G2M_CHECKPOINT.ESdata.Female.22.txt
results/results.HALLMARK_G2M_CHECKPOINT.EStags.Female.22.txt
results/results.HALLMARK_G2M_CHECKPOINT.plot.Female.22.pdf
results/results.HALLMARK_G2M_CHECKPOINT.report.Female.22.txt
results/results.HALLMARK_GLYCOLYSIS.ESdata.Female.14.txt
results/results.HALLMARK_GLYCOLYSIS.EStags.Female.14.txt
results/results.HALLMARK_GLYCOLYSIS.plot.Female.14.pdf
results/results.HALLMARK_GLYCOLYSIS.report.Female.14.txt
results/results.HALLMARK_HEDGEHOG_SIGNALING.ESdata.Male.2.txt
results/results.HALLMARK_HEDGEHOG_SIGNALING.EStags.Male.2.txt
results/results.HALLMARK_HEDGEHOG_SIGNALING.plot.Male.2.pdf
results/results.HALLMARK_HEDGEHOG_SIGNALING.report.Male.2.txt
results/results.HALLMARK_HEME_METABOLISM.ESdata.Male.19.txt
results/results.HALLMARK_HEME_METABOLISM.EStags.Male.19.txt
results/results.HALLMARK_HEME_METABOLISM.plot.Male.19.pdf
results/results.HALLMARK_HEME_METABOLISM.report.Male.19.txt
results/results.HALLMARK_HYPOXIA.ESdata.Female.26.txt
results/results.HALLMARK_HYPOXIA.EStags.Female.26.txt
results/results.HALLMARK_HYPOXIA.plot.Female.26.pdf
results/results.HALLMARK_HYPOXIA.report.Female.26.txt
results/results.HALLMARK_IL2_STAT5_SIGNALING.ESdata.Female.13.txt
results/results.HALLMARK_IL2_STAT5_SIGNALING.EStags.Female.13.txt
results/results.HALLMARK_IL2_STAT5_SIGNALING.plot.Female.13.pdf
results/results.HALLMARK_IL2_STAT5_SIGNALING.report.Female.13.txt
results/results.HALLMARK_IL6_JAK_STAT3_SIGNALING.ESdata.Female.11.txt
results/results.HALLMARK_IL6_JAK_STAT3_SIGNALING.EStags.Female.11.txt
results/results.HALLMARK_IL6_JAK_STAT3_SIGNALING.plot.Female.11.pdf
results/results.HALLMARK_IL6_JAK_STAT3_SIGNALING.report.Female.11.txt
results/results.HALLMARK_INFLAMMATORY_RESPONSE.ESdata.Female.17.txt
results/results.HALLMARK_INFLAMMATORY_RESPONSE.EStags.Female.17.txt
results/results.HALLMARK_INFLAMMATORY_RESPONSE.plot.Female.17.pdf
results/results.HALLMARK_INFLAMMATORY_RESPONSE.report.Female.17.txt
results/results.HALLMARK_INTERFERON_ALPHA_RESPONSE.ESdata.Male.21.txt
results/results.HALLMARK_INTERFERON_ALPHA_RESPONSE.EStags.Male.21.txt
results/results.HALLMARK_INTERFERON_ALPHA_RESPONSE.plot.Male.21.pdf
results/results.HALLMARK_INTERFERON_ALPHA_RESPONSE.report.Male.21.txt
results/results.HALLMARK_INTERFERON_GAMMA_RESPONSE.ESdata.Female.18.txt
results/results.HALLMARK_INTERFERON_GAMMA_RESPONSE.EStags.Female.18.txt
results/results.HALLMARK_INTERFERON_GAMMA_RESPONSE.plot.Female.18.pdf
results/results.HALLMARK_INTERFERON_GAMMA_RESPONSE.report.Female.18.txt
results/results.HALLMARK_KRAS_SIGNALING_DN.ESdata.Male.1.txt
results/results.HALLMARK_KRAS_SIGNALING_DN.EStags.Male.1.txt
results/results.HALLMARK_KRAS_SIGNALING_DN.plot.Male.1.pdf
results/results.HALLMARK_KRAS_SIGNALING_DN.report.Male.1.txt
results/results.HALLMARK_KRAS_SIGNALING_UP.ESdata.Female.16.txt
results/results.HALLMARK_KRAS_SIGNALING_UP.EStags.Female.16.txt
results/results.HALLMARK_KRAS_SIGNALING_UP.plot.Female.16.pdf
results/results.HALLMARK_KRAS_SIGNALING_UP.report.Female.16.txt
results/results.HALLMARK_MITOTIC_SPINDLE.ESdata.Male.5.txt
results/results.HALLMARK_MITOTIC_SPINDLE.EStags.Male.5.txt
results/results.HALLMARK_MITOTIC_SPINDLE.plot.Male.5.pdf
results/results.HALLMARK_MITOTIC_SPINDLE.report.Male.5.txt
results/results.HALLMARK_MTORC1_SIGNALING.ESdata.Female.7.txt
results/results.HALLMARK_MTORC1_SIGNALING.EStags.Female.7.txt
results/results.HALLMARK_MTORC1_SIGNALING.plot.Female.7.pdf
results/results.HALLMARK_MTORC1_SIGNALING.report.Female.7.txt
results/results.HALLMARK_MYC_TARGETS_V1.ESdata.Male.10.txt
results/results.HALLMARK_MYC_TARGETS_V1.EStags.Male.10.txt
results/results.HALLMARK_MYC_TARGETS_V1.plot.Male.10.pdf
results/results.HALLMARK_MYC_TARGETS_V1.report.Male.10.txt
results/results.HALLMARK_MYC_TARGETS_V2.ESdata.Male.9.txt
results/results.HALLMARK_MYC_TARGETS_V2.EStags.Male.9.txt
results/results.HALLMARK_MYC_TARGETS_V2.plot.Male.9.pdf
results/results.HALLMARK_MYC_TARGETS_V2.report.Male.9.txt
results/results.HALLMARK_MYOGENESIS.ESdata.Male.13.txt
results/results.HALLMARK_MYOGENESIS.EStags.Male.13.txt
results/results.HALLMARK_MYOGENESIS.plot.Male.13.pdf
results/results.HALLMARK_MYOGENESIS.report.Male.13.txt
results/results.HALLMARK_NOTCH_SIGNALING.ESdata.Male.4.txt
results/results.HALLMARK_NOTCH_SIGNALING.EStags.Male.4.txt
results/results.HALLMARK_NOTCH_SIGNALING.plot.Male.4.pdf
results/results.HALLMARK_NOTCH_SIGNALING.report.Male.4.txt
results/results.HALLMARK_OXIDATIVE_PHOSPHORYLATION.ESdata.Female.25.txt
results/results.HALLMARK_OXIDATIVE_PHOSPHORYLATION.EStags.Female.25.txt
results/results.HALLMARK_OXIDATIVE_PHOSPHORYLATION.plot.Female.25.pdf
results/results.HALLMARK_OXIDATIVE_PHOSPHORYLATION.report.Female.25.txt
results/results.HALLMARK_P53_PATHWAY.ESdata.Male.16.txt
results/results.HALLMARK_P53_PATHWAY.EStags.Male.16.txt
results/results.HALLMARK_P53_PATHWAY.plot.Male.16.pdf
results/results.HALLMARK_P53_PATHWAY.report.Male.16.txt
results/results.HALLMARK_PANCREAS_BETA_CELLS.ESdata.Female.1.txt
results/results.HALLMARK_PANCREAS_BETA_CELLS.EStags.Female.1.txt
results/results.HALLMARK_PANCREAS_BETA_CELLS.plot.Female.1.pdf
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vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_KRAS_SIGNALING_UP.EStags.Female.15.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_KRAS_SIGNALING_UP.EStags.Female.16.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_KRAS_SIGNALING_UP.plot.Female.15.pdf
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_KRAS_SIGNALING_UP.plot.Female.16.pdf
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_KRAS_SIGNALING_UP.report.Female.15.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_KRAS_SIGNALING_UP.report.Female.16.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_MITOTIC_SPINDLE.ESdata.Male.4.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_MITOTIC_SPINDLE.ESdata.Male.5.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_MITOTIC_SPINDLE.EStags.Male.4.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_MITOTIC_SPINDLE.EStags.Male.5.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_MITOTIC_SPINDLE.plot.Male.4.pdf
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_MITOTIC_SPINDLE.plot.Male.5.pdf
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_MITOTIC_SPINDLE.report.Male.4.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_MITOTIC_SPINDLE.report.Male.5.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_MTORC1_SIGNALING.ESdata.Female.5.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_MTORC1_SIGNALING.ESdata.Female.7.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_MTORC1_SIGNALING.EStags.Female.5.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_MTORC1_SIGNALING.EStags.Female.7.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_MTORC1_SIGNALING.plot.Female.5.pdf
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vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_MTORC1_SIGNALING.report.Female.5.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_MTORC1_SIGNALING.report.Female.7.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_MYC_TARGETS_V1.ESdata.Male.10.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_MYC_TARGETS_V1.EStags.Male.10.txt
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vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_MYC_TARGETS_V2.ESdata.Male.7.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_MYC_TARGETS_V2.ESdata.Male.9.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_MYC_TARGETS_V2.EStags.Male.7.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_MYC_TARGETS_V2.EStags.Male.9.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_MYC_TARGETS_V2.plot.Male.7.pdf
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vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_MYC_TARGETS_V2.report.Male.7.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_MYC_TARGETS_V2.report.Male.9.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_MYOGENESIS.ESdata.Male.12.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_MYOGENESIS.ESdata.Male.13.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_MYOGENESIS.EStags.Male.12.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_MYOGENESIS.EStags.Male.13.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_MYOGENESIS.plot.Male.12.pdf
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_MYOGENESIS.plot.Male.13.pdf
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_MYOGENESIS.report.Male.12.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_MYOGENESIS.report.Male.13.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_NOTCH_SIGNALING.ESdata.Male.4.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_NOTCH_SIGNALING.ESdata.Male.5.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_NOTCH_SIGNALING.EStags.Male.4.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_NOTCH_SIGNALING.EStags.Male.5.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_NOTCH_SIGNALING.plot.Male.4.pdf
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_NOTCH_SIGNALING.plot.Male.5.pdf
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_NOTCH_SIGNALING.report.Male.4.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_NOTCH_SIGNALING.report.Male.5.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_OXIDATIVE_PHOSPHORYLATION.ESdata.Female.25.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_OXIDATIVE_PHOSPHORYLATION.EStags.Female.25.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_OXIDATIVE_PHOSPHORYLATION.plot.Female.25.pdf
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_OXIDATIVE_PHOSPHORYLATION.report.Female.25.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_P53_PATHWAY.ESdata.Male.16.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_P53_PATHWAY.EStags.Male.16.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_P53_PATHWAY.plot.Male.16.pdf
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vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_PANCREAS_BETA_CELLS.ESdata.Female.1.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_PANCREAS_BETA_CELLS.EStags.Female.1.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_PANCREAS_BETA_CELLS.plot.Female.1.pdf
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_PANCREAS_BETA_CELLS.report.Female.1.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_PEROXISOME.ESdata.Female.15.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_PEROXISOME.ESdata.Female.17.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_PEROXISOME.EStags.Female.15.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_PEROXISOME.EStags.Female.17.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_PEROXISOME.plot.Female.15.pdf
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_PEROXISOME.plot.Female.17.pdf
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_PEROXISOME.report.Female.15.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_PEROXISOME.report.Female.17.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_PI3K_AKT_MTOR_SIGNALING.ESdata.Female.8.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_PI3K_AKT_MTOR_SIGNALING.ESdata.Female.9.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_PI3K_AKT_MTOR_SIGNALING.EStags.Female.8.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_PI3K_AKT_MTOR_SIGNALING.EStags.Female.9.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_PI3K_AKT_MTOR_SIGNALING.plot.Female.8.pdf
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_PI3K_AKT_MTOR_SIGNALING.plot.Female.9.pdf
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_PI3K_AKT_MTOR_SIGNALING.report.Female.8.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_PI3K_AKT_MTOR_SIGNALING.report.Female.9.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_PROTEIN_SECRETION.ESdata.Female.12.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_PROTEIN_SECRETION.ESdata.Female.13.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_PROTEIN_SECRETION.EStags.Female.12.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_PROTEIN_SECRETION.EStags.Female.13.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_PROTEIN_SECRETION.plot.Female.12.pdf
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_PROTEIN_SECRETION.plot.Female.13.pdf
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_PROTEIN_SECRETION.report.Female.12.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_PROTEIN_SECRETION.report.Female.13.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_REACTIVE_OXIGEN_SPECIES_PATHWAY.ESdata.Female.4.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_REACTIVE_OXIGEN_SPECIES_PATHWAY.EStags.Female.4.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_REACTIVE_OXIGEN_SPECIES_PATHWAY.plot.Female.4.pdf
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_REACTIVE_OXIGEN_SPECIES_PATHWAY.report.Female.4.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_SPERMATOGENESIS.ESdata.Female.19.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_SPERMATOGENESIS.ESdata.Female.20.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_SPERMATOGENESIS.EStags.Female.19.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_SPERMATOGENESIS.EStags.Female.20.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_SPERMATOGENESIS.plot.Female.19.pdf
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_SPERMATOGENESIS.plot.Female.20.pdf
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_SPERMATOGENESIS.report.Female.19.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_SPERMATOGENESIS.report.Female.20.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_TGF_BETA_SIGNALING.ESdata.Male.20.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_TGF_BETA_SIGNALING.EStags.Male.20.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_TGF_BETA_SIGNALING.plot.Male.20.pdf
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_TGF_BETA_SIGNALING.report.Male.20.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_TNFA_SIGNALING_VIA_NFKB.ESdata.Female.26.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_TNFA_SIGNALING_VIA_NFKB.ESdata.Female.27.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_TNFA_SIGNALING_VIA_NFKB.EStags.Female.26.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_TNFA_SIGNALING_VIA_NFKB.EStags.Female.27.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_TNFA_SIGNALING_VIA_NFKB.plot.Female.26.pdf
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_TNFA_SIGNALING_VIA_NFKB.plot.Female.27.pdf
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_TNFA_SIGNALING_VIA_NFKB.report.Female.26.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_TNFA_SIGNALING_VIA_NFKB.report.Female.27.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_UNFOLDED_PROTEIN_RESPONSE.ESdata.Female.22.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_UNFOLDED_PROTEIN_RESPONSE.ESdata.Female.23.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_UNFOLDED_PROTEIN_RESPONSE.EStags.Female.22.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_UNFOLDED_PROTEIN_RESPONSE.EStags.Female.23.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_UNFOLDED_PROTEIN_RESPONSE.plot.Female.22.pdf
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_UNFOLDED_PROTEIN_RESPONSE.plot.Female.23.pdf
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_UNFOLDED_PROTEIN_RESPONSE.report.Female.22.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_UNFOLDED_PROTEIN_RESPONSE.report.Female.23.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_UV_RESPONSE_DN.ESdata.Male.15.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_UV_RESPONSE_DN.EStags.Male.15.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_UV_RESPONSE_DN.plot.Male.15.pdf
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_UV_RESPONSE_DN.report.Male.15.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_UV_RESPONSE_UP.ESdata.Male.6.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_UV_RESPONSE_UP.EStags.Male.6.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_UV_RESPONSE_UP.plot.Male.6.pdf
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_UV_RESPONSE_UP.report.Male.6.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_WNT_BETA_CATENIN_SIGNALING.ESdata.Female.23.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_WNT_BETA_CATENIN_SIGNALING.ESdata.Female.24.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_WNT_BETA_CATENIN_SIGNALING.EStags.Female.23.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_WNT_BETA_CATENIN_SIGNALING.EStags.Female.24.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_WNT_BETA_CATENIN_SIGNALING.plot.Female.23.pdf
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_WNT_BETA_CATENIN_SIGNALING.plot.Female.24.pdf
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_WNT_BETA_CATENIN_SIGNALING.report.Female.23.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_WNT_BETA_CATENIN_SIGNALING.report.Female.24.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_XENOBIOTIC_METABOLISM.ESdata.Female.7.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_XENOBIOTIC_METABOLISM.ESdata.Female.9.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_XENOBIOTIC_METABOLISM.EStags.Female.7.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_XENOBIOTIC_METABOLISM.EStags.Female.9.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_XENOBIOTIC_METABOLISM.plot.Female.7.pdf
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_XENOBIOTIC_METABOLISM.plot.Female.9.pdf
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_XENOBIOTIC_METABOLISM.report.Female.7.txt
vignettes/Aagmex_hall/Aagmex_hall.HALLMARK_XENOBIOTIC_METABOLISM.report.Female.9.txt
vignettes/Aagmex_hall/Aagmex_hall.global.plots.pdf
vignettes/Aagmex_hall/Aagmex_hall_params.txt
vignettes/GSEA.package.vignette.RMd
vignettes/GSEA.plot.vignettexx.pdf
vignettes/GSEA_plots.pdf
