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NAMESPACE
R/00_library_n_prep.R
R/0_expand_working_envrnmt.R
R/IoU.R
R/compute_shape_index_SAGA.R
R/create_regions.R
R/fill_sink_PD.R
R/fill_sink_SAGA_WL.R
R/filtR.R
R/generate_mtpi_SAGA.R
R/generate_seeds_SAGA.R
R/plot_crossection.R
R/polygonize_segments_SAGA.R
R/seeded_region_growing_SAGA.R
R/watershed_segmentation_SAGA.R
README.Rmd
README.md
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