Man pages for kelvinyangli/mbmml
Learn Markov blankets using Minimum Message Length
| aprx_kld | Approximation of the KL-Divergence between two distributions. |
| aprx_mi | Approximation of the mutual information between two variables |
| cond_probs_adaptive | An auxiliary function to mml_fixed_str() |
| conf_int | A function to calculate the confidence interval |
| count_occurance | A function to count occurances of variable values |
| dag2matrix | A function to convert a bnlearn format dag to its adjacency... |
| directing_tree | Directing a tree |
| dne2bnlearn | Convert netica's dne file to bnlearn dag format |
| edit_dist_dag | A function to calculate the edit distance from the learned to... |
| edit_dist_mb | A function to calculate the edit distance from the learned... |
| factor2numeric | Auxiliary function for mmlLogit |
| fim_logit | A function to calculate FIM entries |
| fim_nb | Calculate FIM of NB |
| forward_greedy | A forward greedy search function |
| forward_greedy_fast | A faster version of a forward greedy search |
| get_parents_instantiation_indices | Auxiliary function to mml_cpt() |
| get_prob_sign | Auxiliary to fim_nb() |
| glm_logit | A function to estimate logit model parameters |
| inner_product | Calculate inner product of logit parameters and input... |
| intersect_indices | Auxiliary function to mml_with_parents() |
| kendall_tau_distance | Kendall tau distance |
| local_extraction | A function that extract the local structure over a given set... |
| log_determinant | A function to calculate log of the determinant of a matrix |
| log_factorial | A faster function to calculate log factorial of a... |
| log_gamma | A faster and accurate approximation to log factorial of a... |
| log_prob_adaptive | An auxiliary function to mml_fixed_str() |
| matrix2dag | A function to convert adjacency matrix to a dag in bnlearn... |
| mb_false_finding | Evaluating Markov blanket learners according to false... |
| mb_retrieval | A function to calculate the classification accuracy of a... |
| mle_nb | MLE of NB parameters |
| mml_cpt | A function to calculate the mml of cpt model |
| mml_cpt_cach | An auxiliary function for mml_pt() |
| mml_cpt_fast | A faster version of mml_cpt |
| mml_dag_fast | A function to calculate the mml score of a dag |
| mml_fixed_str_adaptive | MML for a fixed Markov blanket model using adaptive code... |
| mml_logit | A function to calculate the mml of the 1st order logit model |
| mml_nb | A function to calculate the MML for the Naive Bayes model |
| mml_nb_adaptive | MML Naive Bayes using adaptive code approach (faster version) |
| mml_nb_adaptive_slow | MML Naive Bayes using adaptive code approach (slower version) |
| mml_pt | A function to calculate the mml score of a polytree |
| mml_rand_str_adaptive | MML random Markov blanket models using adaptive code approach |
| mml_without_parents | Auxiliary function to both mml_cpt and mml_cpt_fast |
| mml_with_parents | Auxiliary function to mml_cpt() |
| mml_with_parents_fast | Auxiliary function to mml_cpt_fast |
| msg_len_add | Auxiliary function to msg_len_ave() |
| msg_len_ave | Weighted averaged message length |
| msg_len_weighted_avg | Weighted average message length |
| multi_pars_cal | Auxiliary function to mml_with_parents() and... |
| nll_logit | Calculate the negative log likelihood of an entire data set |
| nll_nb | NLL NB for a single data point |
| node_value_to_index | An auxiliary function to mml_nb_adaptive() |
| numeric2categorical | A function to convert numerical variables to categorical |
| pcmb2list | Convert pcmb's mb results to a list |
| p_ijk | Auxiliary function to fim_nb() |
| powerset | A function to generate the power set of a set of variables. |
| probs_adaptive | An auxiliary function to mml_fixed_str(). |
| prod_pijk | Auxiliary function to fim_nb() |
| randAdjmtx | A function to generate random adjacency matrix |
| randCPTs | A function to generate random CPTs for a given DAG |
| randDag | A function to generate a random DAG |
| rand_mb_model | A function to generate a random Markov blanket model... |
| rand_mbp | A function to generate a random Markov blanket polytree |
| rand_nbr_model | Random neighbourhood model |
| random_bubble_permutation | Random bubble permutation |
| random_permutation | Random permutation of a vector |
| random_permutation_with_randomness | Random permutation of a vector |
| randSeed | Random seek generator |
| resample | A safer version of sample() |
| single_par_cal | Auxiliary function to mml_with_parents() and... |
| sll2list | Convert sll MB output to a list of MBs |
| substitute_vars | An auxiliary function for mml_pt() |
| symmetry_correction | A function to enforce the symmetry correction after Markov... |
| symmetry_correction_adj_mtx | A function to enforce the symmetry correction after Markov... |
