Man pages for kenhanscombe/ukbkings
KCL Interface to UKB Project Data on Rosalind/CREATE HPC
| bio_code | Reads the UKB showcase codings for categorical variables |
| bio_code_primary_care | Reads UKB reference data: primary care maps and lookups |
| bio_covid | Reads the COVID-19 data |
| bio_death | Reads death records |
| bio_field | Reads project-specific UKB field codes |
| bio_field_add | Adds *field* column entries from a dataframe to a file |
| bio_gen_ancestry | Assigns 1000 Genomes super populations |
| bio_gen_fam | Read the project-specific fam file |
| bio_gen_ls | Lists project genetic directory contents |
| bio_gen_related | Read the project-specific relatedness file |
| bio_gen_related_remove | Find relatives to remove |
| bio_gen_sqc | Read the sample quality control file |
| bio_gen_write_plink_input | Writes a two-column dataframe of IDs for PLINK input |
| bio_gp | Reads the primary care data |
| bio_hesin | Reads record-level HES in-patient data |
| bio_phen | Reads and writes phenotype data for a subset of fields |
| bio_record | Reads record-level data from on-disk disk.frames |
| bio_record_map | Applies a function to each record-level disk.frame |
| bio_rename | Updates column names |
| bio_return | Reads returned data |
| drug_dmd_antidep | Curated dm+d antidepressant names |
| drug_gwas | Active ingredients and ATC code of UKB self-reported... |
| drug_pharmgkb | PharmGKB curated drug list |
| pipe | Pipe operator |
| ukbkings | ukbkings: KCL R interface to UKB data on Rosalind/CREATE HPC |
