Files in keshav-motwani/IBMR
What the package does (short line)

.Rbuildignore
.gitignore
DESCRIPTION
IBMR.Rproj
NAMESPACE
R/IBMR-package.R R/IBMR.R R/RcppExports.R R/check_KKT.R R/glmnet.R R/helpers.R R/pca.R R/performance.R R/predict.R R/prepare.R R/simulation.R R/standardize.R R/tuning.R README.md
data/genes.csv
data/marker_genes.csv
data/table_1.csv
example.R example.Rmd
example.html
figures/application_figures_error_1.pdf figures/application_figures_error_2.pdf figures/application_figures_nll_1.pdf figures/application_figures_nll_2.pdf figures/application_figures_time_1.pdf figures/application_figures_time_2.pdf figures/application_heatmap_1.pdf figures/application_heatmap_2.pdf figures/binning_functions.pdf figures/binning_functions_simulation.pdf figures/binning_functions_toy.pdf figures/simulation_figures_line_with_glmnet_1.pdf figures/simulation_figures_line_with_glmnet_label_error_1.pdf figures/simulation_figures_time_with_glmnet_1.pdf figures/simulation_figures_time_with_glmnet_label_error_1.pdf
results/application_R1/n_sample_10000_n_genes_1000_split_index_65_IBMR_int_1.rds
scripts/application_analysis_figures.R scripts/application_de.R scripts/application_description_figures.R scripts/application_figures.R scripts/application_prepare_data.R
scripts/application_prepare_data.slurm
scripts/application_runner.R
scripts/application_runner.slurm
scripts/application_runner_Seurat.slurm
scripts/application_setup.R scripts/simulation_figures.R scripts/simulation_figures_label_error.R scripts/simulation_random_X_and_structured_Beta_runner.R
scripts/simulation_random_X_and_structured_Beta_runner.slurm
scripts/simulation_setup.R
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/fit.cpp
src/gradient.cpp
src/gradient.h
src/objective.cpp
src/objective.h
src/probabilities.cpp
src/probabilities.h
src/prox.cpp
src/prox.h
src/step_size.cpp
src/step_size.h
src/update.cpp
src/update.h
tests/testthat.R tests/testthat/Rplots.pdf tests/testthat/plot_contour.R tests/testthat/test-IBMR_glmnet_coarse.R tests/testthat/test-IBMR_glmnet_fine.R tests/testthat/test-fit_alpha.R tests/testthat/test-fit_alpha_Beta_1.R tests/testthat/test-fit_alpha_Beta_2.R tests/testthat/test-fit_alpha_Beta_Gamma_1.R tests/testthat/test-fit_alpha_Beta_Gamma_2.R tests/testthat/test-fit_alpha_Gamma.R tests/testthat/test-fit_gamma.R
keshav-motwani/IBMR documentation built on April 15, 2023, 9:47 a.m.