Man pages for kevinarbuckle/windex
Analysing Convergent Evolution using the Wheatsheaf Index
| backLog | Backtransforms coefficient estimates from logistic regression |
| barplot.logreg | Plots a barplot from logistic regression parameter estimates |
| error.bars | Plots error bars on a barplot |
| lrTest | Calculates likelihood ratio test |
| mark.dist | Summarising distributions of (exam/coursework/etc.) marks for... |
| modSel.fitMk | Model selection table for categorical trait evolution models... |
| modSel.geiger | Model selection table for phenotypic evolution models fit in... |
| modSel.phylolm | Model selection table for phylogenetic (logistic) regressions... |
| modSel.rayDISC | Model selection table for evolutionary pathway models fit in... |
| modSelTab | Model selection table based on information theoretical... |
| nodeDist | Plotting and/or retrieving distribution of divergence times... |
| pir | Calculates phylogenetic imbalance ratio (PIR) |
| plotTrait | Provides a visualisation of up to three-dimensional trait... |
| prune2data | Prunes a phylogenetic tree to match a vector (e.g. of species... |
| richYuleInputs | Generates the inputs necessary to run richness.yule.test() in... |
| sample.data | Sample data for windex |
| sample.tree | Phylogenetic tree to accompany sample.data |
| se | Calculates standard error |
| test.windex | Tests for particularly strong convergent evolution given... |
| treecheck | Checks a set of phylogenetic trees to confirm they are... |
| treedatacheck | Checks a set of phylogenetic trees to confirm they are... |
| windex | Calculates Wheatsheaf index with 95% confidence intervals |
| windex.sim.test | Tests for presence of convergent evolution (over and above... |
