kfarleigh/HybridFindR: Testing for differential introgression

Functions to detect signals of differential introgression and investigate individual loci. Takes a structure file as input, uses the R package gghybrid to idenify parental alleles, and then uses a permutation approach to determine if there is a greater proportion of parental alleles coming from one species than is expected by random chance. Also allows one to investigate individual alleles according to missingness and the individuals that are homozygous and heterozygous for each of the parental alleles at a locus.

install.packages("remotes")
remotes::install_github("kfarleigh/HybridFindR")