.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/assign_weights.R
R/deconvolve.R
R/extract_trace.R
R/get_Rt.R
R/get_params.R
R/gillespie_run.R
R/gillespie_sepair.R
R/ode_sepair.R
R/pfilter.R
R/process_model.R
README.Rmd
README.md
README_files/figure-gfm/unnamed-chunk-10-1.png
README_files/figure-gfm/unnamed-chunk-13-1.png
README_files/figure-gfm/unnamed-chunk-16-1.png
README_files/figure-gfm/unnamed-chunk-19-1.png
README_files/figure-gfm/unnamed-chunk-22-1.png
README_files/figure-gfm/unnamed-chunk-25-1.png
README_files/figure-gfm/unnamed-chunk-25-2.png
README_files/figure-gfm/unnamed-chunk-25-3.png
README_files/figure-gfm/unnamed-chunk-26-1.png
README_files/figure-gfm/unnamed-chunk-27-1.png
README_files/figure-gfm/unnamed-chunk-28-1.png
README_files/figure-gfm/unnamed-chunk-29-1.png
README_files/figure-gfm/unnamed-chunk-29-2.png
README_files/figure-gfm/unnamed-chunk-30-1.png
README_files/figure-gfm/unnamed-chunk-30-2.png
README_files/figure-gfm/unnamed-chunk-31-1.png
README_files/figure-gfm/unnamed-chunk-32-1.png
README_files/figure-gfm/unnamed-chunk-34-1.png
README_files/figure-gfm/unnamed-chunk-35-1.png
README_files/figure-gfm/unnamed-chunk-37-1.png
README_files/figure-gfm/unnamed-chunk-5-1.png
README_files/figure-gfm/unnamed-chunk-6-1.png
README_files/figure-gfm/unnamed-chunk-8-1.png
data/THETA.rda
pfilterCOVID.Rproj
pfilter_manu.Rmd
stoch_selection.Rmd
stoch_selection.nb.html