Man pages for kkdey/Logolas
EDLogo Plots Featuring String Logos and Adaptive Scaling of Position-Weight Matrices
| aRxiv | Counts of the aRxiv field categories of 4 UChicago Statistics... |
| consensus_PWM_codons | Consensus initiation contexts in seven different organisms.... |
| EBF1_disc1 | EBF1_disc1 transcription factor position weight matrix A... |
| ELF1 | ELF1 initiation contexts in metazoa, fungi and plants. The... |
| get_logo_heights | Get heights of logos in nlogomaker() under different scoring... |
| get_plot | Logo plot for given co-ordinates and fill values |
| get_viewport_logo | Function for creating a multi-panel logo viewport |
| himalayan_fauna | Proportional abundances of different bird species in the... |
| histone_marks | Compositional data of histone marks in different regions of... |
| logomaker | Create logo plots from aligned sequences or positional... |
| logomaker_format_input | Format conversion from FASTA, Genbank, CLustalW. PhyLIP... |
| logo_pssm | Function to plot PSSM logo plot visualization. |
| makemylogo | Logo maker for a given English alphanumeric with common... |
| mutation_sig | Compositional mutational signature data, with mismatch and... |
| N_Glycosyl_sequences | Amino acid sequences from UniProt database that constitute... |
| nlogomaker | Main workhorse function that builds negative logo plots |
| plogomaker | Main workhorse function that builds the positive logo plots |
| pseudocount_adjust | PFM/PWM Pseudo-count adjustment to get rid of 0 entries. |
| pssm | Position specific scoring matrix data A dataset of position... |
| seqlogo_example | An example of the position weight matrix taken from seqLogo... |
| UMI | An example of the position weight matrix of the bases in the... |
