Man pages for korkutlab/reflect
REcurrent Features LEveraged for Combination Therapy
| egfr_data | Dataset of a EGFR-mutant Cohort |
| egfr_result | Result of a EGFR-mutant Cohort from REFLECT |
| get_best_wbound | Get the Best Tunning Parameter |
| get_coaltered_targets | Get Co-altered Targets from Stratification Status and... |
| get_recur_actionable_features | Get the Recurrent and Actionable Features for Each Sample |
| get_recur_pval | Get the Recurrence P Values |
| median_center | Put the median of a numerical vector to 0 |
| pipe | Pipe |
| plot_bar_tumortypes | Plot a Bar Chart of Tumor Type Distribution |
| plot_bar_tumortypes_stack_tcga_ccl | Plot a Stacked Bar Chart of Tumor Types for TCGA and Cell... |
| plot_bar_weights | Plot a Bar Chart of Feature Weights |
| plot_gapstat | Plot a Gap Statistic Profile |
| plot_heatmap | Plot a Heatmap with Feature and Sample Covariate Bars |
| reflect_color | Color for Categories from REFLECT |
| reflect-package | REFLECT |
| reflect_pipeline | Run an End-to-end REFLECT Pipeline |
| reflect_pipeline2 | Run a REFLECT Pipeline Given a Precomputed Tunning Parameter |
| sparse_hclust | Run a Sparse Hierarchical Clustering |
| subsample_robustness | Robustness Analysis Due to Subsampling |
| zscore | Standardize a numerical vector (Z score transformation) |
